YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21537291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAASLHTSI SPRSFLPLSK PSLKPHRSQI LLRNKQRNCV SCALIRDEID LIPVQSRDRT  60
   61 DHEEGSVVVM STETAVDGNE SVVVGFSAAT SEGQLSLEGF PSSSSSGADL GDEKRRENEE 120
  121 MEKMIDRTIN ATIVLAAGSY AITKLLTIDH DYWHGWTLFE ILRYAPQHNW IAYEEALKQN 180
  181 PVLAKMVISG VVYSVGDWIA QCYEGKPLFE IDRARTLRSG LVGFTLHGSL SHFYYQFCEE 240
  241 LFPFQDWWVV PVKVAFDQTV WSAIWNSIYF TVLGFLRFES PISIFKELKA TFLPMLTVGS 300
  301 FGHLLI

Type	Start	End	Confidence
Cytoplasmic	1	215	0.64
Transmembrane Helix	216	235	0.63
Non-Cytoplasmic	236	258	0.85
Transmembrane Helix	259	278	0.68
Cytoplasmic	279	287	0.65
Transmembrane Helix	288	305	0.42
Non-Cytoplasmic	306	306	0.65