YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPPM_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLMAVKTT SLCCSSLNLT ASPTFRRNPR AARLVNPTAR IQTRFHRLIE EQGIVLMPGC  60
   61 YDALSAAIVQ QTGFSAGFIS GYALSASLLG KPDFGLLTPP EMAATARSVC ASAPNIPIIA 120
  121 DADTGGGNAL NIQRTVKDLI AAGAAGCFLE DQAWPKKCGH MRGKQVIPAE EHAAKIASAR 180
  181 DAIGDSDFFL VARTDVRATS AKSGLEDAIA RVNLYMEAGA DASFVEAPRD DDELKEIGKR 240
  241 TKGYRVCNMI EGGVTPLHTP DELKEMGFHL IVHPLTALYA STRALVDVLK TLKENGSTRD 300
  301 HLQKMATFEE FNSLVDLDSW FELEARYSNL RNALGTTKS

Type	Start	End	Confidence
Signal Peptide	1	23	0.85
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	339	0.99