YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30682715, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.35
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMTSIIRSS PTLAFIVLQI CFIFFASTFP CSSGSEDSYT ITGRVKIPPS NVIGHIAKFS  60
   61 NVKVILNGGQ KITFLRPDGY FTFHEVPAGT HLIEVSAMGY FFSPVRVDVS ARHRGKVQAT 120
  121 LTETRRSLTE LVLEPLKEEQ YYEIREPFNI MSIVKSPMGL MVGFMVVVVF LMPKLMENID 180
  181 PEEMKQAQEE MRRQGVPSLT SLLPGAGASR

Type	Start	End	Confidence
Signal Peptide	1	33	0.64
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	156	0.87
Transmembrane Helix	157	175	0.59
Cytoplasmic	176	210	0.49