YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26452748, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTAGRLVT SKSELDLDHP NIEDYLPSGS SINEPRGKLS LRDLLDISPT LTEAAGAIVD  60
   61 DSFTRCFKSN PPEPWNWNIY LFPLYCFGVV VRYCILFPLR CFTLAFGWII FLSLFIPVNA 120
  121 LLKGQDRLRK KIERVLVEMI CSFFVASWTG VVKYHGPRPS IRPKQVYVAN HTSMIDFIVL 180
  181 EQMTAFAVIM QKHPGWVGLL QSTILESVGC IWFNRSEAKD REIVAKKLRD HVQGADSNPL 240
  241 LIFPEGTCVN NNYTVMFKKG AFELDCTVCP IAIKYNKIFV DAFWNSRKQS FTMHLLQLMT 300
  301 SWAVVCEVWY LEPQTIRPGE TGIEFAERVR DMISLRAGLK KVPWDGYLKY SRPSPKHSER 360
  361 KQQSFAESIL ARLEEK

Type	Start	End	Confidence
Cytoplasmic	1	76	0.96
Transmembrane Helix	77	96	0.93
Non-Cytoplasmic	97	103	0.75
Transmembrane Helix	104	122	0.97
Cytoplasmic	123	134	0.86
Transmembrane Helix	135	155	0.80
Non-Cytoplasmic	156	376	0.65