YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8118609
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDPLQVRVKA VLKKRDYGSK YTKNNFITGV RAINEFCLKS SDLEQLRKIR RRSPHDDTES  60
   61 FTVFLRSDVE AKALEVWGSL EALAREKKLR KEAEIEYRER LFRNQRILRE YGDFLGNTKP 120
  121 RSRAVSVFLK GPGKVVMVAI CINGLNCFFK FLAWIYTGSA SMFSEAIHSL SDTCNQGLLA 180
  181 LGISKSVQTP DPSHPYGFSN MRYISSLISG VGIFMMGAGL SWYHGIMGLL HPQPMESLLW 240
  241 AYCILAGSLV SEGATLLVAI NELRRSAQAK GTTFYKYVME SRDPSTNVIL LEDTAAVLGV 300
  301 IIAATCMGLT SITGNPLYDS LGSLGVGTLL GVVSAFLIYT NTEALLGRSI QPEQVQRLTE 360
  361 LLESDPSVRA IHDVKATDLG LGKVRFKAEV DFDGRVVTRS YLEKQDFDQM MQEIQEVKTP 420
  421 EQLEAFMLKH

Type	Start	End	Confidence
Cytoplasmic	1	202	0.75
Transmembrane Helix	203	226	0.88
Non-Cytoplasmic	227	237	0.77
Transmembrane Helix	238	260	0.92
Cytoplasmic	261	288	0.82
Transmembrane Helix	289	313	0.81
Non-Cytoplasmic	314	320	0.68
Transmembrane Helix	321	340	0.93
Cytoplasmic	341	430	0.84