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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12642598
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKNAGDGSD GKNSNKNSNA GGGGGAGGPH DPTGLLDAAS LFAYWGRDPT GAAAAAASNP  60
   61 LFNSQFNAAA AAGLGLLPQA GGASANDRYS MAAAAAAAAG AHHHQNTMAV AASQAASLAG 120
  121 LHPASWWSMA QLAAQDYFSR LQASGLSPFP HPDLAAAFGP AGMGMGGGAG GAGAGGGGAG 180
  181 VLGQGGGGNG GSGNGGGGSS SGSSGSKSNK SRKEKRAAQQ QQQQQQNLAN SLNAAAAAAA 240
  241 AAAANNPAAA LASMHGFGVG VPGTSIPSVS TGSGSISTNS GGHGSYKSTA SAYGKPSTMT 300
  301 SSSMANNPGS AYDPVTLHKE LLAMQAVAAA ASGSGSSGSS GKKSGGGGSS SSSMHSLGMG 360
  361 IGGSGGMMSS GKASTSVSAS NSSLGGMHPS LTSSNPLMSP HAGMGSSSSS SSKDRDKNNP 420
  421 SLNALNSLSQ FGALGMTPQQ SMQAAMNAFA ASTGVSPSAT VTSSPHHSSQ QQQQMGGNSS 480
  481 TSGSGKSSSK DYMMGTGSEH PSLLGVRLPP DTEIIKYTSS IVGPKIPGTT SRGRKKTISE 540
  541 TEQQTTQQQQ KQQHQAEQHL LQQQQQAQKE LDSTKNAISS LLAFPGLSPA KRARLEMEYA 600
  601 AMAAAAQQQH QQAQQQHQAQ QQLHGMLGAA GIPGMAGLVG LPGMSGNPLD QLSVSKASSS 660
  661 TAPTTSTSSS SAGSNLLNQS NSDRVEVIKL PPTITSNGAY NLSSKGKEVH DLTTDMATNS 720
  721 GGVNLSLKSN AGSSALTPSG AVGSASNPIT IDDFDAPLNL SMKPSDKSNS SSSNAAAGGS 780
  781 SSSSAALANL ASDYQAASSG QSGNSLQSLS SITAALGGTG GMPGGSISGS GGTSPAPAGA 840
  841 GSGATGGGSG SGGSGGGSSS YKEGRPRNLG RGVSKPKKNT VASLLAQSRA VGLKPMLATQ 900
  901 QLLQQGADIE KIRLALSEAN AHMETSTDSE SVAAESGLSE SESEDANILN VAELRVPLEL 960
  961 GWKRETVIRG LTKQGQIRGE VTYYAPGSTT PLKSNGQVFA ILEQQPSNLS RENFSFSARA1020
 1021 IVGSFLQPAP PPYANDGEYI RMTDEDVAKR LEDLKVFTRQ TLNVEQRIEI AKQQQAMRDA1080
 1081 KKLQKEELAR NKEKARQEKN SKLEQQRKDK ELKNQQAVEE RERRRQHMSL IRMLELRRKF1140
 1141 EDREKKKHQL VLDRLLLRER RMAERKRDAE ILQLIRRPNE DSEMPQELVI PELDRIAGNR1200
 1201 LPGQAMADLL MVFEFLHNFG ETLGFDMESL PSLQNLHDAL MSDSNADAEE ELLSVMTHLL1260
 1261 VCAIEDPGVP NPGRHTTLLG QSLRNADITN SNVSEILRIY LYATATGEVR QMHGITVDRE1320
 1321 RERRVPDHHQ LDSDTTTHSH SVKNQEYYKL LHENDTWKLS QSLKDRPFVA LNPTRKAQML1380
 1381 AHLCNDLLMN KAVLRQIDGS LETCAQMRKE KYMTDMKVRK YKALHMRKAR IEAYERAQAE1440
 1441 REAAMQALMA QQKLDAERLK AEEEAKAAAA EEAAAAAGTD GEATKGGSPN GEKPEDGDQN1500
 1501 EEGAAKEPQQ QQQQPMEVDG VVDEASLVSP AKTIIQTDNS LTPSKQDMPT PTYQINGSST1560
 1561 PTTSGVTGGD MNVLLQAKKS GARNSINDEH HHDVSIIDDD LSDLDSEITN VEEDEDNRLS1620
 1621 ADELQKKLDK IVRASLNCKE ALEKSTNQLR AACFGQDRFW RRYWKLPKAG GIFIEALESA1680
 1681 QNDICDYHEA LEAMDDKKDA NDEKENSENE KDVAAESSEQ PMEVDESITK LEDGVPASDV1740
 1741 GMPESNQQNA HQDEEDDDDD VTEINKVEPE IVDLGDDDDD AAPPLPKIEP PRPEIKVKSE1800
 1801 MELMGPPPTT MISTKTDFEA EIKIPSMPGI LMPPTLNNNN TNNNNNNNGS DNCDKLETGL1860
 1861 GLGQQQQNFS QSVIKTEDVK KEDDCIIVST SSVDDTPKWF SIVRREVPLI SELPAEEGGV1920
 1921 VGQELQISYA NQNCSAQLQL QGHPWDLINN MQYYSIPMDE CKVDTSKLGN ECIFSLSGLD1980
 1981 EKQMLAKVEE YKAHKVESKN GLGSPHRHHE TKDDEEQAKL KLDKEIDTEM ETDADDLAGK2040
 2041 EKFFRLRSDV PPDTGGGVSE GTDVKPKIEL RLDEALSQAY YHNIANMSLS SVQTYIPIDI2100
 2101 PLPLSMTPDE HRLLEQVKLA GFPERVHGVY VPRRQRYGWW QLDDEQKLRQ LLKTLNPSGL2160
 2161 RERELQENLQ RFLGLEQPLG VNYKLKSDID FPEEFLMPDK KGDWNPKVAK RVELALIEQL2220
 2221 ESLEDKVASA SMQLKNWQLP NRVESELTLD SQEDVTEEDF VSIIPMIRER IIDLEANIER2280
 2281 RYLKPPLGSQ TGDAHLAVIA QNQHTTTQTQ NSASAAAYLL QMQQQQQQQQ LAQQQQQQQQ2340
 2341 GSGAGNSLNP SSFNERTMAL AAAAAASGPG NATGVANSAV VAGATPCESG SGEPNSGNAS2400
 2401 PASNCDSDRD EKVEQIPKGL VQWRDAVSRS HTTAQLAMAL YVLESCVAWD KSIMKAYATK2460
 2461 NKSSKKKSSA KKQATPSKKQ QQKKNKKEQQ LTPNGKESKS KSAINKPENQ APLSIKINLK2520
 2521 ALAQNGQCLL KTKTPPILTK SPTASPSSHP NTSDSDSDFG KRTKKKSGGK RRRSANNTNS2580
 2581 SKYSNSLQNC QFCTSGENED KLLLCDGCDK GYHTYCFKPK MDNIPDGDWY CYECVNKATN2640
 2641 ERKCIVCGGH RPSPVGKMIY CDLCPRAYHA DCYIPPLLKV PRGKWYCHGC ISRAPPPKKR2700
 2701 SAGGTSGSSS KSRRDRDRES GGSAKRRSDN SKTPAMEHMQ QQQMPLAGGD SHHHHHQQPP2760
 2761 SLNSSHDESM NSLPAGSSEV SVGACGRLNG RRSTRSGFQL NNASALCSPA HSVVSATNYD2820
 2821 DQHHANNSVD GSSRFHAHLI PPSNNGTAAL LEDVPGGANV MPGVYPVYTP VAAGNFSAGL2880
 2881 INQAPVQPAM PFANVVAMSP RAVTPTRTRT PTPTPAPTPP PPPPTPLLMQ ASPTATALHV2940
 2941 NACQSPPQQQ HAQLMTMPSP PAIGVGTATN QMSPPPINIH AIQEAKEKLK QEKKEKHATK3000
 3001 KLMKELAVCK TLLGEMELHE DSWPFLLPVN TKQFPTYRKI IKTPMDLSTI KKKLQDLSYK3060
 3061 TREDFCVDVR QIFDNCEMFN EDDSPVGKAG HGMRKFFESR WGELTDKHS

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