YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50761977
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVEEDFFLE EKRFKQYCEE FVKHSQQIGD GWEWRTTKDL GDGYLSKTHF QVTNKSISPD  60
   61 LKKENGSTEQ TLLTHVEESS DDSQVAGVCA TEEVIRYEYH VLYSSSYQVP VLYFRACFLD 120
  121 GRPLTLDEIW KSVHVCYQAR LQEGPWDTIT QQEHPLLGQP FFVLHPCRTN EFMCSILAGS 180
  181 QKDNRHRNYI VLWLSTVGPV VGLTLPLSYA KLEPEENTNA EID

Type	Start	End	Confidence
Cytoplasmic	1	188	0.55
Transmembrane Helix	189	209	0.57
Non-Cytoplasmic	210	223	0.92