YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29747890
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CLDDLRLPPR SLSRCPSSPP PAELVFSLLA DMADIKNNPE YSSFFGVMGA SSAMVFSAMG  60
   61 AAYGTAKSGT GIAAMSVMRP ELIMKSIIPV VMAGIIAIYG LVVAVLIANS LTDGITLYRS 120
  121 FLQLGAGLSV GLSGLAAGFA IGIVGDAGVR GTAQQPRLFV GMILILIFAE VLGLYGLIVA 180
  181 LIISHPGP

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.75
Transmembrane Helix	44	66	0.86
Cytoplasmic	67	85	0.79
Transmembrane Helix	86	108	0.93
Non-Cytoplasmic	109	123	0.76
Transmembrane Helix	124	145	0.91
Cytoplasmic	146	157	0.74
Transmembrane Helix	158	183	0.88
Non-Cytoplasmic	184	188	0.79