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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50760596
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQQLGSTLH PGASSRGHPG PWGRTGCFTQ GGPYESSCFR CLVDVVPVKN EDGVVIMFIL  60
   61 NFEDLAQLIA KSSGRSLHHR LSQSWRAEDD AFLELLLHPT SLPCATKSIA ADGAVRREGR 120
  121 RLKFSLPSLR RLKAQRNSLP TSEFDGVAID YGKVHVHGRC SASVEPAPSG DSPAGEGTAS 180
  181 PSGNHLLNKT FTTAIGDGFY PGRRWLCAPT AVVKGCKLLR LLEKPFCDSM EKRFAMAKGC 240
  241 SVQLRLAASP GPPELPCPRG LGHPRRKAAS VLIQAGAELG NRSTSQPLPS SYLPSSLLPP 300
  301 STRGLLLIKR FLPAVLKPGG DSLILRDLKT SPKENCVQSE TESLLEKERR PSLEADPTLQ 360
  361 HPIPKQEPPS LGPRGSYSAW GFIRSRPGGS FHSLRRVSSL DNFEAARSEF QRKFRERRAN 420
  421 SEASHVKPNP PNSTSDSDLM KYRTISQIPQ FTLNFVEFNL EKHRSGSTTE IEIIAPHKVT 480
  481 ERTQNVTEKV TQVLSLGADV LPEYKLQAPR IHRWTILHYS PFKAVWDWLI LLLVIYTAVF 540
  541 TPYSAAFLLN EEQGEEKHWN CSYSCDPLNI IDLIVDIMFI VDIVINFRTT YVNINDEVVS 600
  601 HPGKIAIHYF KGWFLIDMVA AIPFDLLIFR SGSDETTTLI GLLKTARLLR LVRVARKLDR 660
  661 YSEYGAAVLF LLMCTFALIA HWLACIWYAI GNVERPYMEH KIGWLDNLGD QIGKRYNDSD 720
  721 LSSGPSIKDK YVTALYFTFS SLTSVGFGNV SPNTNSEKIF SICVMLIGSL MYASIFGNVS 780
  781 AIIQRLYSGT ARYHTQMLRV KEFIRFHQIP NPLRQRLEEY FQHAWSYTNG IDMNAVLKGF 840
  841 PDCLQADICL HLNRTLLQNC KAFRGASKGC LRALAMKFKT THAPPGDTLV HYGDVLTTLY 900
  901 FISRGSIEIL KEDIVVAILG KNDIFGEPIS LYARPGKSNA DVRALTYCDL HKIQREDLLE 960
  961 VLDMYPAFSD NFWSNLEITF NLRDVSASVV PGMNAVNTLN LASGRAEADS VPRTPLSEEY1020
 1021 DCTYRRVRRR KHSLCQPNKP DPDTGTSDAE QYHTYSELTN PQDPLSKDQW DDVGSSTTPC1080
 1081 SQTSDDEAKP GSPTKAEPFP LSKKDDFALP ALSLVTASAS GTEVSKQAAE SSQSYAATPL1140
 1141 DIPNMFTFWE DQRPNHHPEP LQHVSLVHSS RDIPLHSDYR PGQIESRLEL LQAQLSRLES1200
 1201 RMSSDINIIL QLLQRQLSQV PPAYSPISPS SHNLAMYGIV PRSLEPLTPC APLEDEQQTA1260
 1261 PGQSPSYAEV EKFHLKSRDS LSSGMHLTVA SDETMTVYSE QEHHSPPLLN PEPPHQRAPN1320
 1321 TQGLLRGSRF PSLPEHLEAS SEHQDIQRHL SDPVLPGKPM GTTKEYSPEE EESSTVQYWG1380
 1381 ELQVGSPGQG QKLSLSYLMA TETPRANNPC HFSTLQHKTQ FTLSSCQKKL FYSHQHVAVP1440
 1441 PYKFILIGYS EKTGLELGTT LEARLAPLNC LGLRLIDTVS IQSDINKGPR ARLAPLRPVG1500
 1501 ANEMSRMSAA SHSGGIERNA SRRAQLGPHL CRARCSPQPQ RGPLGRAMSL HGKRKEIYKY1560
 1561 EAPWTVYAMN WSVRPDKRFR LALGSFVEEY NNKVQLVGLD EESSEFICRN TFDHPYPTTK1620
 1621 LMWIPDTKGV YPDLLATSGD YLRVWRVGET ETRLECLLNN NKNSDFCAPL TSFDWNEVDP1680
 1681 YLLGTSSIDT TCTIWGLETG QVLGRVNLVS GHVKTQLIAH DKEVYDIAFS RAGGGRDMFA1740
 1741 SVGADGSVRM FDLRHLEHST IIYEDPQHHP LLRLCWNKQD PNYLATMAMD GMEVVILDVR1800
 1801 VPCTPVARLN NHRACVNGIA WAPHSSCHIC TAADDHQALI WDIQQMPRAI EDPILAYTAE1860
 1861 GEINNVQWAS TQPDWISLLI QITITLQAP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle