YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50760473
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHWGGTRGRG QSCAGLSALP SSNGSSWEVK AECLPKPAAL SYSECGSCHK CPFLVATPSP  60
   61 QQLSVSAQQK QQPGFIAGVN QRSSADLIQV LPGDFQPKGD RRAVQQRPAM LICTTRFMLR 120
  121 HGHDALPHTS PRASLQCQPQ GQAMHAGPQP AAAPQAEAGL GCPTLLLCTA QTGSERRCNR 180
  181 QKTTSRHRGR MWAYTVGFTV LPHVGGFLGW FITRKEAPVW YEKLKKPSWC PPRKMFPVAW 240
  241 TVLYTSMGYA SYLIWNDLGG CSSKAIIPLG LYGAQLAFNW AWPPFFFSAR NLKMALIDIL 300
  301 CLDSLAIGTV CSWYSINKVA ALLMVPYLGW LAMATCLTIR IWKDNPEQKP GKSE

Type	Start	End	Confidence
Signal Peptide	1	24	0.81
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	190	0.93
Transmembrane Helix	191	213	0.95
Cytoplasmic	214	233	0.89
Transmembrane Helix	234	255	0.88
Non-Cytoplasmic	256	264	0.78
Transmembrane Helix	265	283	0.91
Cytoplasmic	284	293	0.75
Transmembrane Helix	294	316	0.87
Non-Cytoplasmic	317	322	0.71
Transmembrane Helix	323	342	0.93
Cytoplasmic	343	354	0.94