YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50760226
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.29
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVLKQLGG SDGYTAITET HREQRQTLIL FYKFSYKQKG HHCLHCQPKK SSTDLRSVLH  60
   61 SAVTQQTVRD GIRLTGQTKV VCVVSVLLSG QLRAFPPLRS TPRSRSAPRR VLRTAASAHR 120
  121 RGLFEAGAGG RTRRCPPAPE SGAQGSARCC GAGRVVLRPH GTAISERPLS PPRRLRCCPP 180
  181 PRCPGRCFFS EPQAGSAFAP RLISRSTFYS QPSLPLGSSD SFLAVGFGVE CLWRRRFAGL 240
  241 VGVFVWHRHG FALTGCQKAE PIGGGRRKER RICCHQSARS REKRQGQIVA VYAAVRPAAP 300
  301 KPSTGDERKA CAGLGWAVGR DADVCESDGS ERAALAVAFL GNGMQNINNG LNPEKQNSEI 360
  361 RPQGKCVVMR WAVLLKAPKA SSRAVKYMEA KQFVHELLEL PIASSCTACC AVGRHRSLFP 420
  421 TLGKDLPIAV GGNHCSFFSA LGTPLLAGST CAVPGAACCA GERYRRGETR APPGGGGRRC 480
  481 RRVALREPLR LPEEVGNRRD ISAFSSRTLI LEVRPFSESS AIAGLVELAL CLLRPQQFFP 540
  541 ANHKVVCQFA LSGYYWNLCR KANENPELLG NCSIKLEAAF DETLTCSEDK SVLLTAAVCS 600
  601 VTPVCYAAFL GKASLQVDIV PSQGEISVGE SKFFLCQVAG EAKYKDISWF SPNGEKLTPN 660
  661 QQRISVVRND DFSSTLTIYN ANIDDAGIYK CVVSSVEEGD SEATVNVKIF QKLMFKNAPT 720
  721 PQEFKEGDDA VIVCDVVSSL PPTIIWKHKG RDVILKKDEW HFTGSEESSA CLQLSAVRFI 780
  781 VLSNNYLQIR GIKKTDEGTY RCEGRILARG EINFKDIQVI VNVPPSVRAR QSTMNATANL 840
  841 SQSVTLACDA DGFPEPTMTW TKDGEPIEQE DNEEKYSFNY DGSELIIKKV DKSDEAEYIC 900
  901 IAENKAGEQD ATIHLKVFAK PKITYVENKT AMELEDQITL TCEASGDPIP SITWKTSTRN 960
  961 ISNEEKTLDG RIVVRSHARV SSLTLKEIQY TDAGEYVCTA SNTIGQDSQA MYLEVQYAPK1020
 1021 LQGPVAVYTW EGNQVNITCE VFAYPSAVIS WFRDGQLLPS SNYSNIKIYN TPSASYLEVT1080
 1081 PDSENDFGNY NCTAVNRIGQ ESSEFILVQA DTPSSPSIDR VEPYSSTARV EFDEPEATGG1140
 1141 VPILKYKAEW RALGEGEWHS RLYDAKEANV EGTITISGLK PETTYSVRLS AVNGKGVGEI1200
 1201 SLPSDFKTQP VQTTTDSLQL YSLSTARMQD CPLLPAGQGF KLLVSSAAVV CRSFFNSEFK1260
 1261 INDLGSNLFF QDWGKKDGCW VNLLKAARAF HQQLNAYAGR IDLELGMFGG LKEGPLRSHS1320
 1321 WCYWPALISV QHKSTIVSGE PSAPKLEGQM GEDGNSIKVN VIKQDDGGSP IRHYLIKYKA1380
 1381 KHSSEWKPEI RLPSGSDHVM LKSLDWNAEY EVYVIAENQQ GKSKPAHYAF RTSAQPTVIP1440
 1441 GNVGFSIRVT ALPDVKSSGQ KRLSETRKSS FCVLITPVFI PGKGVSRREI ELVLGANCWR1500
 1501 SQHVGDSLKG LVVFLEKQQL GKNYSESNEE NQKWVVLRAW EQGAGKPQLM AFKKSFLFLN1560
 1561 QFLLELHRLS PVNPAGSFSH CVSIGAVVKE NRNQSEFQLA STSPTSGLGT AAIVGILIVI1620
 1621 FVLLLVAVDV TCYFLNKCGL LMCIAVNLCG KSGPGAKGKD MEEGKAAFSK DESKEPIVEV1680
 1681 RTEEERTPNH DGGKHTEPNE TTPLTEPEHT ADTAATVEDM LPSVTTGTTN SDTITETFAT1740
 1741 AQNSPTSETT TLTSSIAPPA TAIPDSNAMS PGQATPAKAG ASPVSPPPPS STPKVAPLVD1800
 1801 LSDTPSSAPA TNNLSSSVLS NQGAVLSPST VANMAETSKA AAGNKSAAPT PANLTSPPAP1860
 1861 SEPKQEVSST KSPEKEAAQP STVKSPTETA KNPSNPKSEA ASGGTTNPSQ NEDFKMDEGT1920
 1921 FKTPDIDLAK DVFAALGTTT PASVASGQAR PYISCLPEQQ QEQTLLSAVT RSMSSATDQH1980
 1981 PLGGTVVAVT QTGVSAMTWT EKLSALLCVS PWLLELHTED DTGKPLLRGL RTSPFGAEQQ2040
 2041 PEATQIQFPL LFLFQPNSAE QSLLQKLRYR VHHSASFPSP ALPQRLHARR CQRSSAQPSI2100
 2101 FVVTLFPGFP STTPGSTTQP YRRRTRNGGL RAPPPCAKPR PRRVATPPSC CRYVSSVVSM2160
 2161 ATPQTLRNLR PPAMAALPDP QQEADFQRFL RRVDDISRLV QGLSSADSAV RDAAIAETDR2220
 2221 RLRERQGSEQ SAAAADRTVI NTRDPGSVNA EAVHTEGFLA ALEKDAKERA KRRKRNERLA2280
 2281 NGNHQGLFQL MPSGALKEKG NDAFRKGDYS TAAQRYTDGL QKLKDMPELY TNRAQAYLKM2340
 2341 HEYGKAIDDC KWALKCNAKC IKAYFLMGKA HLALKHYDES RQCYQNLLQI DPQKESLFKD2400
 2401 CMNEVNLEEK RMQEEDRAMK AFQSGKHAAL SIKDLLQKLD RPDQNILYYI GGIQVLTGAV2460
 2461 KECTEQTLFR TNNGFSIIND NEVIRRGFCA ERKSTAEVDL CVSLLSLWQA VCAGNEENQR2520
 2521 LLLTHPDVNA QLSELLCSGG VEIQKETLAL IALYSDNENG RRLLVRHQDL SRWLQILVMF2580
 2581 VNSTDARASS AMSILSDLIQ EEKFKAQCRL TFSTSALPLF TQLLASAKLV DQAALARCIG2640
 2641 IMGNLCADAA IRVQMAECNE CWQACLQLVD GCGDVGTPKY QECVFAVLGL MMNLLLESNS2700
 2701 VIQCLAVDIS GRCMSLLRDQ DGRIVTRAIG VLSRILAASS LAVEEAVKGG VVKKMIKFLK2760
 2761 AGGQTTSSYA LKTLSICTRG SRQAQEEVVK SDKKFSVLLK LLDSENEMIV GNAAFCLGQC2820
 2821 LVVPGAATSL LNSNIVMALL KHAGGDAART SVQENAAIAL GKLCVAEPRC QSGYVPFPDS2880
 2881 CGSGKEMTLV SNGAGRAVGL SAQELLHKMQ DLLPIFVLIA SELLDFSGAP RAEHHVGGAP2940
 2941 DLSFPGETQP ISGSSPLSVT EDDLGEATNY VQTPAADPTN EVTADFIPSH AEVTARATAT3000
 3001 LPVELVRDVE GCTKHHSSQE THSSSQGSTA LVLQRDADHQ MTSKPEKSRF PEKPQVSASA3060
 3061 SLQGVQAVTA GHSRAIPVVS TRVPRTAPRA PLTAGKLLSS SLPAVGLPDP PLPAQPPFPI3120
 3121 AGAVDLAEPS KEAALQGAVQ GSAPAPSSAR AQCAECLRSA RTTNYPLRVS TSTVPLQSTP3180
 3181 QSILSSEPLQ RLPSPAGVVP GTVLGMPPAP PTGSERRDSA AGSAAWPGVA LQPRAAPTPP3240
 3241 SSISPDLAKH MELTPAVPKP PAAFDVKATS GKLLAAVTHP RMYTENVHPA SLRPSVAMHI3300
 3301 PPPSAMKHDR STRAQGSVGE DAKPTEVSTS ARKTGPAGSS TPLAAVFNTR VEQRPAAVQG3360
 3361 SEAALAPVQS AEAVIERHSS TGQRPGPPPT GSAVGLPLST EEEEEVGPRE VTEEAAEGSV3420
 3421 TDLTPLGSQP GEPRRRSAVQ PEGAVLSGVV VVSDELCGSG NYTVRMTLRP VADTSLGLQG3480
 3481 LPPTQDSFLA LVAVQSSLQP VLQLRSCCVT PSSSLQGPSA VCCPLPRLPA ECKHIQLLPS3540
 3541 SESGAASFTI QLFQMLNHSV AYLHCELNVC LQGHTGCEQD CFVGAEPLPP PEDRNRHGNP3600
 3601 HNMVSFGPVL RAMGSVGYKP AEGPNSAMLV PILLGSLTGF AVLGSTSVIK TFWRVKAQSK3660
 3661 PKCVCIEGDT ATKEQCPSPK DSPSSLQRIC NHSRFCAKLQ LKGCSVVVAN THPNLPELQQ3720
 3721 GAGLRGCVYV LMFLTYKSGD PPLGSPRTSP FTLGVEELPS SSHTRSSCWQ CRVASAAMAS3780
 3781 GTEQQCGSLT VFSKEDFEED WVKVASGGFG CVYQVKHKKW RTVYAVKCSP YLLQDPGTER3840
 3841 TSVNCLMEEA TKMEKIKFQH IVTIYGVCNS PLGIVMEYMA RGSLEKILPT HKMSWQLKFR3900
 3901 VIHEMGLAMN FLHSMTPPLL HLDLKPGNIL LDGNMHVKIS DFGLSKWMEQ SSRMQYIESS3960
 3961 ALRGTLSYIP PEMFLQNTKP PGIKYDVYSF GIVIWEVLMQ KKPYAGANMM AIIVKVAAGK4020
 4021 RPCLEPISDD WPGECQQMVD LMKRCWDQDP KQRPSFTGVV AKQGTDIPVE TDMLLSLIQS4080
 4081 LVVDPENERL VRKMSHKPAI AGNQQSDKEE LIFSQDTRTG GTGHQEVHVP PSHSEMESPE4140
 4141 DILCEEIWRV HENGLTLLHF VVIQGNVGKV KFLLSCKANV NSQAVCGYTP LIVAVQKRSP4200
 4201 EICSVLIEHG ADTNMPDEDG WTPLHFAAQN GDDRIVRLLL DHQARVNAQE HDGWTPLHLA4260
 4261 SQNNFENVAR VLLSRQADSN TQEVDGKTAL HVAACFGHVG LVKLLASQGA DLEKKQKNHR4320
 4321 TPLHVAVERG KFRVVHYLLK NGASVNSLDQ NHYSALHLAV VRGKYLICEK LIKYGANVEL4380
 4381 RTDKGWTPLH LASFKGHIEI IHLLKDSCAK LNARGSMGWT PLHLATRYSE EPVVCELLRC4440
 4441 GADPNITEKS EWAPLHFAVQ RGSFLTVINL LECRADVNVK NKVGWTPLHL AVLKGNMAII4500
 4501 KTLIKAGALL NVEDITGCTA LQLAIRHQKE NIITLLQGKD SLMNALQNRT LARQMNGALV4560
 4561 RAVPFNHRLQ PVLLRAGLSS AKKSMQAAVV PAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle