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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50759625
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPPRSQSQH VFHLLAAGKT NSRQAFTLSV RSGQWGEPNS SERGVRSGAG RESKQKLSET  60
   61 LPHPMEQPLL LAAPDRPGGG IQLSPRGLEA LRALSAPVHV VAALGPPGGG SVFLMNQLAG 120
  121 PGCGFPGSPG LWMRIRPHPK WPDRDLLLLH AGGFLGGKEP EDGAGLQLFM LQLLLASVLV 180
  181 YGSDDGGGDA QDQLELFTYA QTVLHHLRLL DEEDEDEDPL LRFVLPPFVW SLRSTALAPE 240
  241 SEDVLEAEDH KLEAALGSPL GPIARCVLML FPEQKLFRVA DSNAEGLIQL CTYLLRCDPK 300
  301 TEPGGAYVGG AYLAALAERV VDAMQGDAVL RIGRLCQEAK EIAQQETGDK WPEDADFWQD 360
  361 DTFLKNKDTS DTIPQPDDIL QATTSLWHDD TDGDTPLRPE DVAWVEAPSP HPLSPMPAPL 420
  421 CLVENSDGNK LSVNPEALAV LRGITQPVVV VAIAGPYRTG KSFLMNRLAK QRTGFPLGPT 480
  481 VRAETKGIWM WCLPHPSQAG VALVLLDTEG LGDPNKGDNS NDAWIFTLAL LFSSTLVYNS 540
  541 MGTIDQQGLD QLRLVTELTN HIRVRVDDPD PAAEFSRVFP SFVWTVRDFT LQLREGKRLL 600
  601 TEDEYLEDAL RLKPGNGRMV QEHNEMRRCL RAFFTHRKLF VLERPTADAN LARLEEVRED 660
  661 ELQPRFRQQA DAFCQHIWEK APVKMLPGGR QVTGTMLASL VEKYVDTIVK GKVPCVESAV 720
  721 TALARTRNTE AVAEAVAEYR KGMEQDLVLP TDSRAVLVDV HRRWERRAVT LFLSHAFADN 780
  781 ERTYQCQLMR ELEAAKEEFC RRNEEASEQQ CQKVLRELWQ NVERRLQCGD YAAPGGAQLF 840
  841 QDDLGYVLEK YKWWPGKGVK ALHATDAQLV MMERQREAAA AKEAAVREAE VACLKEQQRS 900
  901 LEEHCRQLEQ RLLEEQRLRL KEQDRMLEHR LKEHQTLMEE GYKHEAKAMR LQIERLREEK 960
  961 KSIKKHSWIM SGLGMLCSAA SLFLPGVVGK VASFASNLVQ RDDVGSTVSC RCCAPKQGGH1020
 1021 SDSSDRACAE GGGALAAGLG GTVARPVMSY GPLDPYRPGP TAPPRDFGGI IQTCSANVQR1080
 1081 IAQYTAQIKN LMSQLGTKQD SSKLQENLQQ LQHSANCLAK ETNEYLKELG SLPLPLSASE1140
 1141 QRQQRLQKER LMNDFSAALN NFQAVQRQVS EKEKETVARA RAGSRISADE RFREEQLVSF1200
 1201 DSGEDWSQMQ SQEEDAAITE QDLELIKERE TAIRQLEADI LDVNQIFKDL AMMIHDQGDM1260
 1261 IDSIEANVES AEVHVERASE QLQRAAYYQK KSRKKICILI LGLAVASIIL GLIIWWTAK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle