YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221256304, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.90
Transmembrane Helix	114	133	0.83
Non-Cytoplasmic	134	143	0.69
Transmembrane Helix	144	167	0.81
Cytoplasmic	168	224	0.69
Transmembrane Helix	225	247	0.79
Non-Cytoplasmic	248	276	0.60
Transmembrane Helix	277	297	0.90
Cytoplasmic	298	317	0.90
Transmembrane Helix	318	340	0.92
Non-Cytoplasmic	341	377	0.92
Transmembrane Helix	378	400	0.87
Cytoplasmic	401	465	0.92
Transmembrane Helix	466	486	0.93
Non-Cytoplasmic	487	493	0.76
Transmembrane Helix	494	516	0.91
Cytoplasmic	517	523	0.84
Transmembrane Helix	524	542	0.95
Non-Cytoplasmic	543	559	0.82
Transmembrane Helix	560	580	0.91
Cytoplasmic	581	658	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVHDILETM GIGKNTTSKS VEAGGSTEGK YEDESKHPTF FTLPVVINGG ATSSGDQDTE  60
   61 DTELMAIYTT ENGIAEKSSL AETLDSTGSL DAQRTDMIYT IEDVPPWYLC IFLGLQHYLT 120
  121 CFSGTIAVPF LLADAMCVGF DQWATSQLIG TIFFCVGITT LLQTTFGCRL PLFQASAFAF 180
  181 LAPARAILSL EKWKCNNTDI TVTNGTTELL HTEHIWYPRI REIQGAIIMS SLIEVVIGLL 240
  241 GLPGALLRYI GPLTITPTVA LIGLSGFQAA GERAGKHWGI AMLTIFLVLL FSQYARNVKF 300
  301 PLPIYKSKKG WTAYRLQLFK MFPIILAILV SWLLCFIFTV TDVFPPDSSK YGFYARTDAR 360
  361 RGVLLVAPWF KVPYPFQWGL PTISAAGVIG MLSAVVASII ESIGDYYACA RLSCAPPPPI 420
  421 HAINRGIFIE GLSCVLDGVF GTGNGSTSSS PNIGVLGITK VGSRRVIQYG AAFMLLLGMV 480
  481 GKFSALFASL PDPVLGALFC TLFGMITAVG LSNLQFIDLN SSRNLFVLGF SIFFGLVLPS 540
  541 YLKQNPLVTG IAGIDQVLNV LLTTAMFVGG CVAFILDNTI PGSPEERGIR KWKKGVGKGS 600
  601 KSLEGMETYD LPFGMNFIKK YRCFSFLPIS PTFMGYTWKG FRKSSNCRSS DEDSEATV