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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50759287
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.96
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKERCSSA LLRCPGQLEG RRGHLALQGR LQRTPLQLTA SEEEFLRTYA GVVNSQLSQL  60
   61 PQHSIDQASC AESSTESWAC SGQAEVLPGG FVGLCSCKAS REKRKTSLCD QMSNEYHDPK 120
  121 YKIEYFIAEY FKRFHPIWCK YLKYFHESPS NCNSWPEHQE LSYHSAGLER SGGAAAVCTG 180
  181 VAVGPCRLFC APLLPLLAGR CSSRPSVLSS APDNRPPPQL RKKPIAASRP AAAPALPALR 240
  241 PAHAERSPDQ RGRHSLPAAG AARCPSPLRA AMPPPARCLL LLAALLCGGA GAARVNKHKP 300
  301 WIETTYHGIV TENDNTVLLD PPLIALDKDA PLRFAGEICG FKIHGQNVPF EAVVVDKSTG 360
  361 EGIIRSKEKL DCELQKDYTF TIQAYDCGKG PDGANAKKSH KATVHIQVND VNEYSPVFKE 420
  421 KSYKATVIEG KRYDNILKVE AVDADCSPQF SQICNYEIVT PDVPFAIDKD GYIKNTEKLS 480
  481 YGKEHQYKLT VTAYDCGKKR AAEDVLVKIS IKPTCKPGWQ GWSKRIEYEP GTGSLALFPS 540
  541 MRLETCDEPI TSIQATVELE TNHIGKGCDR DTYSEKSIHR LCGAASGTAE LLPSPSSAAN 600
  601 WTIGLPTDNG HDSDQVFEFN GTQAVKIPDG VVTVNLKEPF MISVWMRHGP GTKEKETILC 660
  661 NSDKTDMNRH HYTLYVHNCR LVFLFRQDPS EGKTYKPAEF HWKLNQVCDK EWHHYVLNVE 720
  721 FPAVTLYVDG VSYDPFPVTE DYPLHPSKIE TQLVVGACWQ EYTGNENDNE TLPETSAGGE 780
  781 LRMAQFFRGN LAGLMIRSGK LENKKVIDCL YTCKEGLDLQ IADGVGKGVK IHMNPSQSAV 840
  841 TIEGDDIDRV DKAMQHISYL NSRQFPTPGI RRLKITSTVK CFNEEACVSI PSVEGYVMVL 900
  901 QPEEPKISLS GINHFARSAS EFESSEGISL FPELRIISTI TREVEPDGDG DEDPTVQESL 960
  961 VSEEIMHNLD TCEVTVVGEE LNQDQESLEV DMTRLQQKGI EMSSSNLGMI ITGVDTMASY1020
 1021 EEVLHLIRYR NWHTVSLFDR KFKLVCSELN GRYVSNEFKV EVNVIHTANP IEHANHIAAQ1080
 1081 PQFVHPVHHT FVDLSGHNLA NPHPFSVVPS TATVVIVVCV SFLVFMIILG VFRIRAAHQR1140
 1141 TMRDQDTGKE NEMDWDDSAL TITVNPMETY EDQHSSEEEE EEEEEESEDG EEDDITSAES1200
 1201 ESSEEEEGEQ EEDQQNVNRQ QQLEWDDSTL SY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle