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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50758853
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSSVVPAE HKWGRCDAED MELLRDTQGT LDLAASPPEG GMKGAGSPEL HVWGGYQSGC  60
   61 PAPGGLEMKL RPCRAASKSP QRRARHHLQL LWYRFKASMQ DLVPPWETQP GPGARPCVPW 120
  121 KGAAAAGKDV PGCSEQQVTP GTQEGDTGAV WALTVVFRQH CRRVAGMWQG SLLGRPGPSA 180
  181 REAPRCPPAL RSWALPHHSV LPSLSVFAEL LLSPCCCFGS GCCSMPQFLV LLDMMLRVCP 240
  241 AAVANASLRR EHIFSWGAAK KSTEEEGGHF PAPRSRSCPQ APLGSPSAFP ARTAGKTHGH 300
  301 WLGSSPSDGP HYSSETPTQC QSKGTQRGAG ESAVELHTRW AALEKGSCPE STSRGFPAKR 360
  361 NMQKVWQPGH RAQACEKPDP VKHQTEEISL LAAEGLLLLK GRGSSCRPLL YHNSLLFGLC 420
  421 CEMERMQPDK ATFTRPEAQS KKLPSQGCGD GQPPPCSPLR QNVSTDRRSG VNMSELTQRS 480
  481 VPALQSGDPL LLPGIPQALQ HPTTSHPSPS SPSLRPAAVS FTASALYLLK QEANPLPAHP 540
  541 TLHRSPPPCC PVRPPRPGEQ HQVGWIRAAQ LLLAGRGEGD GHATRPLLPG ADARRRVTHF 600
  601 RPVGGTCPWR AAGAGAMAEA QNGSAGPQAV PAASARPPAT PEGIALAYGS LVLMALLPIF 660
  661 FGALRSVSCA KSKNSSEMPE TITSRDAARF PIVASCTLLG LYLFFKIFSQ EYINLLLSMY 720
  721 FFVLGILALS HTISPMMNRF FPANFPNKQY QLLFTQGSGE SKEEIVNYEF DTKDLVCLAL 780
  781 SSVVGVWYLL RKHWIANNLF GLAFSLNGVE LLHLNNVSTG CILLGGLFIY DVFWVFGTNV 840
  841 MVTVAKSFEA PIKLVFPQDL LEKGLEADNF AMLGLGDIVI PGSCTFVLCS LPYSLKKNTH 900
  901 TYFYTSFVAY IFGLGLTIFI MHIFKHAQPA LLYLVPACIG FPLLVALAKG EVTEMFRGKT 960
  961 VPEWGLGCSS CIAGSRAAPG LLPLPWETQP LSLCVVTQPL AAAPPLCARK RMGETSCRAG1020
 1021 PWVSTVLGES GSCLWGNKDT QSTEHGLHQR QNCLLPPEVT PVAVRESRMW QGCYLQARGP1080
 1081 CCRNPPLPPP PKCSSPAPLH FTSSSESIPV VSAVHEVPER GQRGSMQAVL QDRQSGWLCA1140
 1141 AALEKRSQWS RAGWH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle