YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50758492
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.90
Transmembrane Helix	35	56	0.87
Non-Cytoplasmic	57	66	0.74
Transmembrane Helix	67	92	0.86
Cytoplasmic	93	110	0.76
Transmembrane Helix	111	130	0.83
Non-Cytoplasmic	131	143	0.76
Transmembrane Helix	144	164	0.87
Cytoplasmic	165	254	0.93
Transmembrane Helix	255	273	0.93
Non-Cytoplasmic	274	297	0.86
Transmembrane Helix	298	320	0.87
Cytoplasmic	321	358	0.94
Transmembrane Helix	359	379	0.91
Non-Cytoplasmic	380	399	0.93
Transmembrane Helix	400	423	0.85
Cytoplasmic	424	448	0.90
Transmembrane Helix	449	467	0.87
Non-Cytoplasmic	468	489	0.83
Transmembrane Helix	490	516	0.80
Cytoplasmic	517	527	0.54
Transmembrane Helix	528	551	0.80
Non-Cytoplasmic	552	568	0.60
Transmembrane Helix	569	591	0.84
Cytoplasmic	592	629	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNIAACLYS PREQRWAFQH RASSTMAPCW QVALAFRKYL VIILVPLVFL PLPLAVPTKE  60
   61 AQCGYVIILM ALLWCTEALP LAVTALLPVL LFPMMNIMDS TAVCREYLKD TNMLFIGGLL 120
  121 MAIAIENWNL HKRVALRVLL ITGVRPALLL MGFMLVTAFL SMWISNTATT AMMVPIAQAV 180
  181 LDQLHKSEME SEAANQVFEN DNKAFELQEE PTKSNSFKET EEKGNNHVLA AEEDKERNEH 240
  241 PADEKHKKLC KGMSLAICYA ASIGGIATLT GTTPNLVLKG QVDEIFPNND NVINFASWFS 300
  301 FAFPTMVVLL ILAWIWLQIL FLGFNFQKNF GCVRDPSAKN KEQQAYQIIK DENKKLGSMK 360
  361 FAEIAVLVLF ILLVLLWFTR EPGFIPGWAT VLFNKNDTSF VSDATVAIFI SFLLFIIPSE 420
  421 FAIKQQTGGK TKIRAPPALL NWKVVHEKMP WNIVFLLGGG FALAKGSEES GLSGWLGTKL 480
  481 TPLENIPHPA IAFLLCLLIA TFTECASNVA TTTLFLPILA SMAQSICLNP LYVMLPCTLS 540
  541 ASLAFMLPVA TPPNAIVFSY GHLKVIDMAK AGFVLNILGV LTINLAINTW ASSLFKLNTY 600
  601 PSWANSTFPG IIAVEDPRKD NLVLTLQRL