YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50758312
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.98
Transmembrane Helix	81	103	0.86
Non-Cytoplasmic	104	113	0.71
Transmembrane Helix	114	134	0.92
Cytoplasmic	135	168	0.95
Transmembrane Helix	169	191	0.88
Non-Cytoplasmic	192	206	0.83
Transmembrane Helix	207	227	0.92
Cytoplasmic	228	236	0.89
Transmembrane Helix	237	260	0.86
Non-Cytoplasmic	261	270	0.66
Transmembrane Helix	271	291	0.87
Cytoplasmic	292	311	0.85
Transmembrane Helix	312	331	0.76
Non-Cytoplasmic	332	356	0.69
Transmembrane Helix	357	377	0.86
Cytoplasmic	378	390	0.84
Transmembrane Helix	391	411	0.92
Non-Cytoplasmic	412	435	0.84
Transmembrane Helix	436	453	0.95
Cytoplasmic	454	462	0.75
Transmembrane Helix	463	485	0.88
Non-Cytoplasmic	486	489	0.79
Transmembrane Helix	490	512	0.91
Cytoplasmic	513	608	0.98
Transmembrane Helix	609	630	0.89
Non-Cytoplasmic	631	672	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTAQNTQRQ PPAADGPTDA PSLLEEEDDP LTHRTQQGGS GRMKRPEENG ISEGTADGRG  60
   61 QKRSWMQRLI PDSFWEDAKK LLVLAGPLIL IQLLIFLIHL VSSIFCGHLG KVELASVTLA 120
  121 IAVINVTAIS VGYVSSRGNT EPFPGAQELT PCSRPQTYGS RNLLRVGVIL QRAILILLLC 180
  181 CFPCCAVLIN IEQLLLLIRQ DPEVSRLTQL YVMAFVPALP AVFLYNLETR YLQNQMIMWP 240
  241 VVLSGLVGNV VNVIANSVFL YVFHLGIVGS AWANTIAQYS QTIFLFLYIV GKKLHVKTWG 300
  301 GWSRECLLEW DSFTSLAIPS MLMMCIEWWT YEIGSFLIGL LSVVELSAQS VIYEVSVVAF 360
  361 MIPLGLGTAA SVQVGNALGA GDIEVAKRSS STSMLCTGAF CIAVGAILAA TKDVLGYIFT 420
  421 NEKEIIDLVA WVMPVYVVFH LFEAMCCACG GVLRGTGKQK FGAILNAVSY YGVGLPLGAV 480
  481 LLFVARIGVI GLWLSMLVCV SMLCTCFLIY ICRMDWRKAA EEAQRRAGVT PQPLEEQHQN 540
  541 PEPHSKGPSL APHTHLPAAA VRGCVAGMDA QNGVVLTGIT RTEGANFREE PRGALPGAAP 600
  601 SRGLILRRGL TAAAAIAVLA LGVSSAFGSI SSAPAWERPY SRSNRSTAPG CYAEQCRRPL 660
  661 PAHAAALSTD PS