YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50758268
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGQPERSPQ LHRPQRPPGG CGTPGNGAPR PQRSQSGVSP RSMPGAVVSR SGEAAGHAGR  60
   61 WSRGTAPHNG RLPQRNYDSH RPSRAAPSAL RKPRCRRLER VAAPRTTMAA APPPSTPGGS 120
  121 QPPPPLQYSA LLQHLVGEQR RPRVWDPNTF GGIPSPPKSK EQKMVERAME SCAFKAALAC 180
  181 VGAGSISHPS SFPGFVLGGA FGIFTAGIDT NVGFDPKDPY RTPTAKEVLK DMGQRGISYA 240
  241 KNFAIVGAMF SCTECVVESY RGKSDWRNSV ISGCITGGAI GFRAGMKAGV IGCGGFAAFS 300
  301 AAIDYYLR

Type	Start	End	Confidence
Cytoplasmic	1	171	0.84
Transmembrane Helix	172	204	0.54
Non-Cytoplasmic	205	283	0.51
Transmembrane Helix	284	307	0.73
Cytoplasmic	308	308	0.50