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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50758260
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAARGLDR GPRVLLPFCA LLALLGPARG VHIKKAEAAE PGEALRYLHA AELGEALREL  60
   61 AASAPPGLAR LFSIGESVEG RPLWVLRLTA GLEAPRAGEE PGGSPLPGRP QVKLVGNMHG 120
  121 DEPLARPLLL QLARELVRGW AGGDVRIGRL LNTTDLYLLP SLNPDGFEHA QEGDCGGGVA 180
  181 SGRENSRGRD LNRSFPDQFE ASEPDLGPVP EVRALIAWMR RNKFLLSGNL HGGSVVASYP 240
  241 YDDSPTHKPT GVYSKSADDE VFKYLAKAYA SHHPIMRTGK PNCPGEEGET FPEGITNGAQ 300
  301 WYDVEGGMQD YNYVWADCFE ITLELSCCKY PLTSELEQEW ENNRESLLSF IEKVHIGVKG 360
  361 FVRDAVTKAG LENTTIVVAG IAHNITAGKY GDYHRLLVPG TYNVTAVAMG YTPLTRENIE 420
  421 VKEGDATEVD FFLQPAVMAP APNITQLTAT PAPASTVAST VVQAEAPSPT SLHQPVQPVD 480
  481 FRHHHFSDME IFLRRCANEY PNITRLYSAG KSVELRELYV MEISDNPGVH EAGEPEFKYI 540
  541 GNMHGNEVVG RELLLNLIEY LCKNFGTDPE VTDLVRSTRI HIMPSMNPDG YEKSQEGDRG 600
  601 GTVGRNNSNN YDLNRNFPDQ FFQVADPPQP ETLAVMSWLK TYPFVLSANL HGGSLVVNYP 660
  661 YDDDEQGMAI YSKSPDDAVF QQLALSYSKE NKKMYQGSPC KDMYPNEYFP HGITNGAQWY 720
  721 NVPGGMQDWN YLNTNCFEVT IELGCVKYPD AEELPKYWEQ NRRSLLQFMK QVHRGVWGFV 780
  781 LDATDGRGIL NATISVAEIN HPVTTYKDGD YWRLLVQGTY KITASARGYN PVTKTVAVDS 840
  841 EGAVQVNFTL KRTDAKVEEG KVPVPNTPDT SDPNEKEFET LIKDLSAENG VERLLLSSSG 900
  901 KVSPYRYRPY KDLSEFLRGL YLNYPHITNL SSLGQSVEFR QIWSLEISNK PNQSEPEEPK 960
  961 IRFVAGIHGN APVGTELLLT LAEFLCMNYK KNAAVTKLID RTRIVIVPSL NPDGREIAQE1020
 1021 RGCTSNIGRT NAHGRDLDTD FTSNYSRYSG TREPETKAII DNLILKRDFS LSVALDGGSL1080
 1081 LVTYPYDKPV QTVENKETLK HLASVYANNH PSMHLGQPGC PNKSDENIPG GVIRGSEWHS1140
 1141 HLGSMKDFSV TFGHCPEITV YTSCCYFPSA GQLPGLWAEH RRSLLSMLVE VHKGVHGFVQ1200
 1201 DKSGKAISKA VIVLNEGLRI CTKEGGYFHV LLAPGLHNIN AIADGYQQKH MQVLVRHDAP1260
 1261 SSVFIVFDME NKIFGLPREL VVTVAGASMS ALVLTACIIW CVCSIKSNRH KDGFHRLRQH1320
 1321 HDDYEDEIRM MSTGSKKSLL SHEFQDETDT EEETLYSSKH 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle