YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50758070
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGGRPGGR RREGGRGLEV RGESGGSRAS RSGSNSLSAT ANRRPESGRE HEGTDQSPSA  60
   61 PAHGGGEYEQ KERGRARRSA NEDAAWLRGR CVARLPIGGG AGEVRACAER RRKRKQRRGA 120
  121 KMAYQTFRQE YLQVPPVTRA YTTACVLTTA AVQLELITPF QLYFNPELIF KHFQVWRLIT 180
  181 NYLFFGPVGF NFLFNMIFLY RYCRMLEEGS FRGRTADFVF MFLFGGFLMT IFGLFVNLVF 240
  241 LGQAFTIMLV YVWSRRNPYV RMNFFGLLIF QAPFLPWVLM GFSLLLGNSI IVDLLGIAVG 300
  301 HIYFFLEDVF PNQPGGGRLL RTPSVLKAIF DTPEDDPNYN PLPEERPGGF AWGEGQRLGG 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	139	0.81
Transmembrane Helix	140	157	0.56
Non-Cytoplasmic	158	177	0.65
Transmembrane Helix	178	200	0.88
Cytoplasmic	201	217	0.64
Transmembrane Helix	218	244	0.84
Non-Cytoplasmic	245	262	0.52
Transmembrane Helix	263	297	0.73
Cytoplasmic	298	360	0.56