YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50757857
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWEADERDL SQTVKTSLVL THLVVAAASQ RDGASNTDQP QFFSKACRYH HPIINNSQSF  60
   61 GNSPEQTAAA EMLLEQTPFS ETKILDGLSI EGCTCACTPR PAAPGAHRYT GHHKQGGCGE 120
  121 GSQGRALTAV ESGKGSTLAE LQAALPKGRH CPKGRSLQGT ARHGAAGLPD GQRAASSIEK 180
  181 HTTTTETHFT LTVCEDFSLR PYPICSTLSP CHAPPDTAQQ LGLTFAEAEE RQDDGSPRGA 240
  241 AGGEQGPGKG GPGAASHGGM DETKPLKVRL TFCVLLVGVS LLFAAVVTDH WAVLSPRVED 300
  301 FNATCEAAHF GLWRLCTKRI HVQKQSAKET GCGPISLPGA HNCSYFKHFT PGLSSEIFEV 360
  361 TTQKEYSISA AAIAIFSVGF AIIGTICVLF SFQKKRDYLL KPASMFYTFA GLCIIISVEV 420
  421 MRQSVKRMID SKDTVWMEYS YSWSFACACS AFVLLFVFGI VLLLIALPRF PQNPWETCMD 480
  481 AEPEH

Type	Start	End	Confidence
Cytoplasmic	1	269	0.89
Transmembrane Helix	270	288	0.86
Non-Cytoplasmic	289	367	0.92
Transmembrane Helix	368	392	0.89
Cytoplasmic	393	402	0.76
Transmembrane Helix	403	421	0.91
Non-Cytoplasmic	422	441	0.86
Transmembrane Helix	442	466	0.91
Cytoplasmic	467	485	0.91