YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SURF1_CHICK
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWGLLLRA GPRLLRERRA RISHCLLRRT FFGFPRTKAG SAVTQQGDVC LRLCSPRSST  60
   61 TATSAAGEDA WLKWGLLLVP LTAFCLGTWQ IQRRKWKLDL IAQLASRLSS EPIPLTLDPM 120
  121 ELKELEYRPV KVRGHFDHSK ELYILPRSLV DPEREAREAG KLTSHAENGA NVITPFYCTE 180
  181 LGVTILVNRG FVPKKKLKPE TRLKGQIEEE IDLTGVVRLS EKRKPFVPEN NIEKNRWHYR 240
  241 DLEAMAKVTG AEPIFIDADF RSTVPGGPIG GQTRVSLRNE HMQYIVTWYG LCAATSFLWY 300
  301 RKFIQKIPL

Type	Start	End	Confidence
Non-Cytoplasmic	1	283	0.68
Transmembrane Helix	284	303	0.71
Cytoplasmic	304	309	0.58