YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50756657
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPEAFCLDP VHPADLQLQR LLEQPVLKPV RLEDCENRNG LMTFFTSPEA QTVGAIRGIK  60
   61 AELNKRNLTP FKPFGADKSN FKRVFLSVDD ARSCEALPAH PQLQSTARPF LGQDEPASPP 120
  121 LSQRSLLPAR PHGRGAAGPD NRPPRPRALF PRVRAAAARE RVPPPCWAAS RSGAATEPRS 180
  181 CPAREEAAEE ERGARPPAAA MAEQTYSWAY SLVDSSQVST FLISILLIVY GSFRSLNMDF 240
  241 ENQDKEKDNS STAGSFNGNS TNNSIQTIDS TQALFLPIGA SVSLLVMFFF FDSVQVVFTI 300
  301 CTAVLATIAF AFLLLPMCQY LTRPCSPQNK ISFGCCGRFT AAELLSFSLS VMLVLIWVLT 360
  361 GHWLLMDALA MGLCVAMIAF VRLPSLKVSC LLLSGLLIYD VFWVFFSAYI FNSNVMVKVA 420
  421 TQPADNPLDV LSRKLHLGPN VGRDVPRLSL PGKLVFPSST GSHFSMLGIG DIVMPGLLLC 480
  481 FVLRYDNYKK QANSDSCGAP GPGNISGRMQ KVSYFHCTLI GYFVGLLTAT VASRIHRAAQ 540
  541 PALLYLVPFT LLPLLTMAYL KGDLRRMWSE PFHSKSSSSR FLEV

Type	Start	End	Confidence
Cytoplasmic	1	272	0.55
Transmembrane Helix	273	291	0.83
Non-Cytoplasmic	292	295	0.76
Transmembrane Helix	296	318	0.89
Cytoplasmic	319	334	0.83
Transmembrane Helix	335	357	0.85
Non-Cytoplasmic	358	362	0.69
Transmembrane Helix	363	383	0.89
Cytoplasmic	384	389	0.79
Transmembrane Helix	390	411	0.89
Non-Cytoplasmic	412	462	0.96
Transmembrane Helix	463	483	0.93
Cytoplasmic	484	511	0.97
Transmembrane Helix	512	533	0.90
Non-Cytoplasmic	534	541	0.72
Transmembrane Helix	542	560	0.96
Cytoplasmic	561	584	0.94