YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14161489
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFLQSTLN VISIALITSA YLPPTLSCQQ NPGRRRNKML PRQPSMFKLF TLISLILVGT  60
   61 ISIFSYKNRT ALTSRNVTSF KNFLSSPSTS SKPIPEKIWY KLGAKGISPK IQEWTATCIS 120
  121 KNPTYVTEFL TDDSADEYVK IHFSHRPDIV DTYLSLPIPI LKADMLRYLL LIAEGGVWND 180
  181 LDITCGDIPI RDWIPEQFKK DANLVVGWEF DVGWGESFIR QFTSWTIMAR PGSKHLEMVV 240
  241 HDILDAIDKT KKKHKLPKTT GLQLQMLGDI VDYTGPRRLT RSIFKSLSED LGGEVNAGNA 300
  301 SNLLSPKLLG DVLILPGFSF ASSTNKYEGV KGPDGKDFVP GQGASSKVLV KTWAGKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.67
Transmembrane Helix	7	26	0.68
Cytoplasmic	27	45	0.84
Transmembrane Helix	46	66	0.89
Non-Cytoplasmic	67	357	0.98