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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50755982
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGFMQVPWR SAVSLEVPNL DLQCPIHGAA LQSPGGGSPA IAAPGLGDTA VGERLPLVLA  60
   61 CKKKDFGSLF DLENDLPDEL IPNGELGLLN SSGNLVPDAA SKHKQLSELL RGGSGSSLNP 120
  121 GIGNVNSNSP VQQGVGSQVQ GQPNSASIGN LGAMGKSPLN QGDSSASGLA KQVASTSGPT 180
  181 TPASQTLNSQ AQKQVGMQAA KRAGCERSLW QARVATRAAS HPALLLCAHR LDQLLGSYGD 240
  241 AQCRKRFGSS YAVSHFISLC WPSQKEVWKC FVHVCRVGVS FQREIRVQSA GLQLAGTRRD 300
  301 WLQGLSWELA AVLLGWGVAP AFLVFLHCIT AHGSCIASAL CDLSSVSTGD TSVLDFLTLT 360
  361 ESDKQEEARG ASLLADAQDV GESSDSSVFL ELFLLLNTHF SCALLGDSAL TLLNSEGCKD 420
  421 GGGLLKCIFV FLLQLLCQVI PKHWELMLFG SCFCWGSSSI VASAESCYRQ MGMAGNTSPF 480
  481 GQPFSQTGGQ QMGATGVNPQ LPNKPGMANS LPAFPADIKS TPVTSVPNMP PVCRVLGLWG 540
  541 TRSVRAALLG SPIKLAAVLQ CAAWCLPGMG MGSFLVAVTV SLAFWYGLPF LKGKREESNL 600
  601 LMQLCIGMKL LQSQMQTQVQ QVGIVPTQAM ATGPTADPEK RKLIQQQLVL LLHAHKCQRR 660
  661 EQANGEVRAC ALPHCRTMKN VLNHMTHCQA GKACQVAHCA SSRQIISHWK NCTRHDCPVC 720
  721 LPLKNASDKR NQQPLLGSPA GGMQNSIGSV GTGQQNNPSL SNPNPIDPSS MQRAYAALGL 780
  781 PYGNQPQTQL QPQVQGQQPA QPQAHQQMRT INALGANQMN LPTGGITTDQ QASLISETAL 840
  841 PTSLGTNNPL MNDGTNSGNV GNLSSMPTAA PPSSTGVRKA WHEHVTQDLR NHLVHKLVQA 900
  901 IFPTPDPAAL KDRRMENLVA YARKVEGDMY ESANSRDEYY HLLAEKIYKI QKELEEKRRS 960
  961 RLHKQGILGT QPALQTPGPQ PPGIPQVAAA MGQAQPVRPP NGPMSMTTVP ISRMQVSQGN1020
 1021 VQMPQAPMGP RAASPMNHPV QMNNMGAVPA MAMSPSRMPQ PQNMMGAHSN NMMGQAPTQN1080
 1081 QFLPQNQFPA STGAMNVNNV GMGQSAAQAG VAQGQVPSAA LPNSMNMLGP QSGQLCPPVT1140
 1141 QPPLHQTTPP VSTAAGMPPI QHQTPTGMTP PQPAAPTQPS TPVSSSGQTP TPTPGSVPNA1200
 1201 TQTQSTPTGQ TAAQAQVTPQ PQTPVQPQSV PTPQPSQQQP TSVQAQPPGT PQLGPDAPML1260
 1261 ESKSEVKTEE TEPETSETQV EAKTEVEEDL QGSSQTKEET DGTELKQEPM EIEEKKPEIK1320
 1321 VDAKEEEESG TNGTTSQSTS PSQPRKKIFK PEELRQALMP TLEALYRQDP ESLPFRQPVD1380
 1381 PQLLGIPDYF DIVKNPMDLS TIKRKLDTGQ YQEPWQYVDD VWLMFNNAWL YNRKTSRVYK1440
 1441 FCTKLAEVFE QEIDPVMQSL GYCCGRKYEF SPQTLCCYGK QLCTIPRDAA YYSYQNRYHF1500
 1501 CEKCFTEIQG ENVTLGDDPS QPQTTISKDQ FEKKKNDTLD PEPFVDCKEC GRKMHQICVL1560
 1561 HYDIIWPSGF VCDNCLKKTG RTRKENKFSA KRLQTTRLGN HLEDRVNKFL RRQNHPEAGE1620
 1621 VFVRVVASSD KTVEVKPGMK SRFVDSGEMS ESFPYRTKAL FAFEEIDGVD VCFFGMHVQE1680
 1681 YGSDCPPPNT RRVYISYLDS IHFFRPRCLR TAVYHEILIG YLEYVKKLGY VTGHIWACPP1740
 1741 SEGDDYIFHC HPPDQKIPKP KRLQEWYKKM LDKAFAERII HDYKDIFKQA TEDRLTSAKE1800
 1801 LPYFEGDFWP NVLEESIKEL EQEEEERKKE ESTAASETTE GSQGDSKNAK KKNNKKTNKN1860
 1861 KSSISRANKK KPSMPNVSND LSQKLYATME KHKEVFFVIH LHAGPVINTL PPIVDPDPLL1920
 1921 SCDLMDGRDA FLTLARDKHW EFSSLRRSKW STLCMLVELH TQGQDRFVYT CNECKHHVET1980
 1981 RWHCTVCEDY DLCINCYNTK SHDHKMVKWG LGLDDESNSQ GEQQSKSPQE SRRLSIQRCI2040
 2041 QSLVHACQCR NANCSLPSCQ KMKRVVQHTK GCKRKTNGGC PVCKQLIALC CYHAKHCQEN2100
 2101 KCPVPFCLNI KHKLRQQQIQ HRLQQAQLMR RRMATMNTRN VPQQSLPSPT SATPGTPTQQ2160
 2161 PSTPQTPQPP PQPQPSPVSM SPAGFPNVSR TQPPTTVSTG KPANPVAAPP PPAQPPPAAV2220
 2221 EAARQIEREA AQQQQQQLYR VNNINNGLPP GRPGLVNPTV GSVSQMQQVG MNVPRPSPVS2280
 2281 GPVMSNMQPG QWQSPPMPQQ QAMQPGMARP VMPMATAQAV AGPRMPGVQQ PPRSIPPNAL2340
 2341 QDLLRTLKSP SSPQQQQQVL NILKSNPQLM AAFIKQRTAK YVANQPGMQP QAGIQPQPGM2400
 2401 QQPQTGMQQP GMHAQPGLQN MNAMQAGVQR PSVPPQQQGI GAMNPQGQAI NIMNPGHNTS2460
 2461 MASMNHPQYR EILRSQFQQP QGPGGYPQAM QQQRMQQHIS IQGGSMGQMA QMGQLNQMGQ2520
 2521 PGLGADGTPN IQQALQQRIL QQQQMKQQIG SPGQPNPMSP QQHMLSGQPQ ASHLPGQQIA2580
 2581 TSLSSQVRSP APVQSPRPQS QPPHSSPSPR IQPQPSPHHV SPQTGSPHPG LAVTMASSMD2640
 2641 QGHLGNPEQS AMLPQLNTPN RSALSNELSL VGDTTGDTLE KFVEGL

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