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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50755330
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSPLPAPT DILLPSPSGA YPPDPMSQQQ RAGHAAMKPN QVGQVILYGI PIVSLVIDGQ  60
   61 ERLCLAQISN TLLKNFSYNE IHNRRVALGI TCVQCTPVQL EILRRAGAMP ISSRRCGMIT 120
  121 KREAERLCKS FLGENRPPKL PDNFAFDVSH ECAWGCRGSF IPARYNSSRA KCIKCTYCSM 180
  181 YFSPNKFIFH SHRTPDAKYT QPDAANFNSW RRHLKLTDKS PQDELVFAWE DVKAMFNGGS 240
  241 RKRALPPTPT ATTPGTTAVP QCHALGSVKA AAVVGGGLLA PHLLAAAPQE LQQKRPRFEE 300
  301 DEELHEAVAV AGGKSPRSYP LIPVPSKGAF GGVLQKFPGC GGLFPHPYGF PAAFGLCHKK 360
  361 EEGSSAGDAL GGTAAHKAGG GTAGGGGLSG LFWPGRKDAA FYPPFCMFWP PRTPGALPVP 420
  421 TYLQPPPQPP GATLGCALGD GALRQAFLDL SEPEAAASEP ASPSASDGGN GASGARVPPH 480
  481 PLEAAGGHKA ARGGYHHSSA FRPNQKGKEG NQVVLPTKED NFPDKSKEHN FFITDSEPSG 540
  541 GDFWRDVAAI TIAVIQQEKN LKNLRIFRNT SGDAPKELKI IQIPMAVFTD TVTNLCEHTQ 600
  601 EANSPHSLKK DVENMGKEEL QKVLFEQIDL RRRLEQEFQV LKGNASFPVF NNFQDQMKRE 660
  661 LAYREEMVQQ LQIVYKKSLK EGKIHPGVAF SGLWRSGLPP TTHTSKPFRA LPFRRAAASQ 720
  721 LNSQTVCICD TSALSKSMEG SIFFRMLQDA EEGFRTTSLS KEEGALFSCL FPLAFKITFA 780
  781 VFVGVVTALR GPRLHFLKLF IDKTHPWSPS ALQGSSSIIY EIIMLSLGGG LLLLFVISVT 840
  841 VRILQSRCTP RYSSKDLSAP TVVLENTAVT NNCSDKISTV NLTGPGYGKI PFLTSNVEFQ 900
  901 HMGTRIVMLA GARPLRKPNH CTLHRLTPEG AALRTGPHGA LSTRAALRDA CACVAPSRCP 960
  961 RAYRRSVGQP RAVRTPGCED PARTRSGRMA ARRALKAVLV DLSGTLHVED SAVPGAQEAL1020
 1021 KRLRGAPVTI RFVTNTTKEC KKDLLERLTK LGFDIAEHEI FTSLTAARNL LEQKQVRPLL1080
 1081 LVDEKALPDF TGIATDDPNA VVIGLAPEHF HYEMMNKAFR LILDGAPLIA IHKARYFKKK1140
 1141 NGLALGPGPF VAGLEYATDI KATVVGKPEK TFFLEALRGT SCAPEEAVMI GDDCRDDVGG1200
 1201 AQNAGMRGIL VRTGKYRPAD ENKINPAPYL TCESFPEAVE HILEHLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle