YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50755224
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFDSFNTD FFQTSYSIDE QAQPYEYGGG RPYSRQYGGY EYSQQSGFVP PEMMQQQPYT  60
   61 GQIYQPTQTY TPTSAQSFYG SNFEDEPPLL EELGINFDHI WQKTLTVLHP LKVADGSIMN 120
  121 ETDLAGPMVF CLAFGATLLL AGKIQFGYVY GISAIGCLGM FCLLNLMSMT GVSFGCVASV 180
  181 LGYCLLPMIL LSTFAIVFSL QGVMGIILTA GIIGWCSFSA SKIFISALAM EGQQLLVAYP 240
  241 CALLYGVFAL ISVF

Type	Start	End	Confidence
Cytoplasmic	1	123	0.94
Transmembrane Helix	124	141	0.90
Non-Cytoplasmic	142	147	0.65
Transmembrane Helix	148	167	0.90
Cytoplasmic	168	173	0.66
Transmembrane Helix	174	198	0.83
Non-Cytoplasmic	199	202	0.66
Transmembrane Helix	203	225	0.86
Cytoplasmic	226	234	0.76
Transmembrane Helix	235	253	0.91
Non-Cytoplasmic	254	254	0.88