YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50755218
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVATDGILE GSSCAEQCSM RAAWCKAQLC SPNVQHEGRP SVLVVCTSRC KCNKELPAAT  60
   61 FLCSKLELAY LVHAGDALLL ISCRVIYTKL WEAWCTKHTV FSEVLRCEEL QNEEEPGEAA 120
  121 PVVSDAPPPY SSISAENTAY FDYKDESGFP KPPSYNVATT LPSYDEAERT KAEATIPLVP 180
  181 GREEDFVTRD DFDDSDQLRI GNDGIFMLTF FMAFLFNWIG FFLSFCLTTS AAGRYGAISG 240
  241 FGLSLIKWIL IVRFSTYFPG YFDGQYWLWW VFLVLGFLLF LRGFINYAKV RKMPDTFSTL 300
  301 PRTRVLFIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	204	0.83
Transmembrane Helix	205	227	0.88
Cytoplasmic	228	234	0.63
Transmembrane Helix	235	252	0.82
Non-Cytoplasmic	253	265	0.77
Transmembrane Helix	266	285	0.95
Cytoplasmic	286	309	0.94