YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20466594, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.82
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	77	0.93
Transmembrane Helix	78	99	0.92
Cytoplasmic	100	105	0.81
Transmembrane Helix	106	125	0.92
Non-Cytoplasmic	126	131	0.88
Transmembrane Helix	132	151	0.91
Cytoplasmic	152	170	0.81
Transmembrane Helix	171	192	0.79
Non-Cytoplasmic	193	205	0.67
Transmembrane Helix	206	228	0.80
Cytoplasmic	229	236	0.80
Transmembrane Helix	237	258	0.88
Non-Cytoplasmic	259	264	0.69
Transmembrane Helix	265	286	0.88
Cytoplasmic	287	297	0.70
Transmembrane Helix	298	316	0.83
Non-Cytoplasmic	317	329	0.78
Transmembrane Helix	330	350	0.94
Cytoplasmic	351	358	0.71
Transmembrane Helix	359	379	0.91
Non-Cytoplasmic	380	387	0.80
Transmembrane Helix	388	411	0.86
Cytoplasmic	412	430	0.79
Transmembrane Helix	431	453	0.82
Non-Cytoplasmic	454	470	0.66
Transmembrane Helix	471	493	0.67
Cytoplasmic	494	499	0.70
Transmembrane Helix	500	522	0.88
Non-Cytoplasmic	523	528	0.71
Transmembrane Helix	529	548	0.90
Cytoplasmic	549	559	0.88
Transmembrane Helix	560	581	0.90
Non-Cytoplasmic	582	595	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHSSCKGLV LLLFLFVVVF IGNTDANAQW EVSHKVRASP HENMGRNVID GSGVEKTLHD  60
   61 IGMGEKRGTH NKVSVSTVAL FTLAMAAATG LGAVPFFFVE LDPQWAGICN GMAAGVMLAA 120
  121 SFDLVKEGQE HGSGNWVVTG ILAGALFIWL CKQILEQYGE VSMLDIKGAD ATKVVLVIGI 180
  181 MTLHSFGEGS GVGVSFAGSK GFSQGLLVTL AIAVHNIPEG LAVSMVLASR GVSPQNAMLW 240
  241 SIITSLPQPL VAVPAFLCAD AFSKFLPFCT GFAAGCMIWM VIAEVLPDAF KEASPSQVAS 300
  301 AATISVASME ALSTLFESFT HDYNSEDASG FFVSLLFGLG PLLGGVFLVA SAVTFRLQHA 360
  361 LLMGVASGIA FVLGLWRPLQ LLLSAKMGLI PLVSLLAIGA GLSHFTSSTI LNVTGRKKSR 420
  421 AGSLINPVTN FPTSVITLQS LLACGAVGFH ALAEGLALGV AAPNAYGLGR HMVLPVSLHG 480
  481 LPRGTAVASC VFGATDSWHA ALAAAALIGF VGPISAIGSI LAGIDYSGLD NVMVVACGGL 540
  541 LPSFWQVIKR AVRLERRKGS VGMVLGLACA VVCLTFTRLV CLHTPYCNSA PEAVR