YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX25_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.95
Transmembrane Helix	45	64	0.94
Non-Cytoplasmic	65	81	0.72
Transmembrane Helix	82	101	0.77
Cytoplasmic	102	119	0.86
Transmembrane Helix	120	141	0.92
Non-Cytoplasmic	142	159	0.83
Transmembrane Helix	160	178	0.92
Cytoplasmic	179	185	0.82
Transmembrane Helix	186	207	0.83
Non-Cytoplasmic	208	221	0.54
Transmembrane Helix	222	246	0.69
Cytoplasmic	247	255	0.60
Transmembrane Helix	256	282	0.71
Non-Cytoplasmic	283	301	0.76
Transmembrane Helix	302	322	0.86
Cytoplasmic	323	338	0.88
Transmembrane Helix	339	360	0.94
Non-Cytoplasmic	361	378	0.80
Transmembrane Helix	379	401	0.84
Cytoplasmic	402	409	0.73
Transmembrane Helix	410	432	0.87
Non-Cytoplasmic	433	438	0.78
Transmembrane Helix	439	459	0.93
Cytoplasmic	460	497	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGGGEMEE RLLNGSETEQ RRESLYLRKK IWSEVRKMWR IALPSTLFRV MSFGCVVVAQ  60
   61 AFIGHSSETG LAAYALLQST FIRFIYGIMA GMSSATETLC GQAYGAEQYH MMGIYLQRSW 120
  121 IVDTFIATLF VPFIVLAGPI LRLLGQNVVI SETVDEIYPW VIPYLYSIVF TMTMQMYLQA 180
  181 QMKNAIIGIL STLALVLDIA ATWWCVSVMG MGIHGALLGL NISSWSVAIA EFVYVFGGWC 240
  241 PHTWTGFSTA AFLDLIPMLK LSISSGFMLC LEYWYMSIIV LMSGYAKDAN IAISAFSICQ 300
  301 YIYSWEMNIC FGLMGAACVR VANELGKGDA DAVRFSIKVV LVVSAVIGVI CSALCLAFGG 360
  361 QISYLFSDSQ AVSDAVADLS IVLSISILFN IIQPILSGVA IGAGMQSMVA LVNLASYYAI 420
  421 GVPLGVLLVY VFNFGIKGLW SGMLAGVGIQ TLILCYVIYK TDWELEVKKT NERMKTWTLN 480
  481 LPAVQSTTIS TRDEERK