YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBL15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPNIVTEAG VQTRVGQWWN AIPFLTSSVV VVCGVIYLIC LLTGYDTFYE VCFLPSAIIS  60
   61 RFQVYRFYTA IIFHGSLLHV LFNMMALVPM GSELERIMGS VRLLYLTVLL ATTNAVLHLL 120
  121 IASLAGYNPF YQYDHLMNEC AIGFSGILFS MIVIETSLSG VTSRSVFGLF NVPAKLYPWI 180
  181 LLIVFQLLMT NVSLLGHLCG ILSGFSYSYG LFNFLMPGSS FFTTIESASW MSSFIRRPKF 240
  241 IMCTGGNPSS YIPTYSAQNT TSSGFSTGNA WRSLSSWLPQ REASNQSSED SRFPGRGRTL 300
  301 STARDPTAPA GETDPNLHAR LLEDSSSPDR LSDATVNTVA DSRQAPIANA AVLPQSQGRV 360
  361 AASEEQIQKL VAMGFDRTQV EVALAAADDD LTVAVEILMS QQA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	41	0.95
Non-Cytoplasmic	42	66	0.85
Transmembrane Helix	67	88	0.86
Cytoplasmic	89	102	0.83
Transmembrane Helix	103	122	0.96
Non-Cytoplasmic	123	140	0.80
Transmembrane Helix	141	162	0.87
Cytoplasmic	163	176	0.81
Transmembrane Helix	177	201	0.85
Non-Cytoplasmic	202	209	0.74
Transmembrane Helix	210	232	0.83
Cytoplasmic	233	403	0.91