YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCB1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNLVEMFN AALNWVTMIL ESPSARVVLF GVPIRGHFFV EGLLGVVIII LLTRKSYKPP  60
   61 KRPLTEQEID ELCDEWVPEP LIPPITEDMK HEPPVLESAA GPHTTVNGKD VVNFASANYL 120
  121 GLIGHEKLLE SCTSALEKYG VGSCGPRGFY GTIDVHLDCE TRISKFLGTP DSILYSYGLS 180
  181 TMFSTIPCFC KKGDVIVADE GVHWGIQNGL QLSRSTIVYF KHNDMESLRI TLEKIMTKYK 240
  241 RSKNLRRYIV AEAVYQNSGQ IAPLDEIVKL KEKYRFRVIL DESNSFGVLG RSGRGLAEHH 300
  301 SVPIEKIDVV TAAMGHALAT EGGFCTGNAR IIDYQRLSSS GYVFSASLPP YLASAAITAI 360
  361 DVIDQNPDML VKLKQNVALL WKGLSDIKGM SLTSNRESPI VFLKLEKSSG SAKDDLLLLE 420
  421 KMADRALKED SLLVVSSKRS FLDKCRLPVG IKLYVSAGHS ESDLLKASES LKRLASELLL 480
  481 KS

Type	Start	End	Confidence
Cytoplasmic	1	33	0.36
Transmembrane Helix	34	53	0.67
Non-Cytoplasmic	54	482	0.63