YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	E1311_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELTSFHRSS LLFLISLTLI ILPTTTTSIG VNYGQIGDNL PSPTDVIPLI KSIGATKVKL  60
   61 YDANPQILKA FSNTGIEFII GLGNEYLSKM KDPSKALTWI KQNVTPFLPA TNITCITIGN 120
  121 EILALNDSSL TTNLLPAMQG VHSALITAGL SDQISVTTAH SLSILKSSFP PSAGEFQPDL 180
  181 LDSLTPILEF HRKTDSPFLI NAYPFFAYKG NPKEVPLDFV LFQPNQGIVD PATGFHYDNM 240
  241 LFAQIDAVYS ALAAAGFKSL RVEISETGWP SKGDDDEVGA TPENAKRYNG NLIKMMMSGK 300
  301 KTKTPLKPNN DLSIYVFALF NENLKPGPTS ERNYGLFKPD GTQAYSLGFA LNDVVRGASG 360
  361 GGTGGGNSSS GGGRDKSPVF PVSPVAPDSA STGYLAISAS PVTGKRKGKG AILSLVVSML 420
  421 LARHLL

Type	Start	End	Confidence
Signal Peptide	1	28	0.97
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	426	0.99