YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51968668, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVDARVGVA VDGAQSALNT ATTVHSSVVM TQIKPQAKLG TFQNLLAGGI AGAISKTCTA  60
   61 PLARLTILFQ LQGMQSEGAV LSRPNLRREA SRIINEEGYR AFWKGNLVTV VHRIPYTAVN 120
  121 FYAYEKYNLF FNSNPVVQSF IGNTSGNPIV HFVSGGLAGI TAATATYPLD LVRTRLAAQR 180
  181 NAIYYQGIEH TFRTICREEG ILGLYKGLGA TLLGVGPSLA INFAAYESMK LFWHSHRPND 240
  241 SDLVVSLVSG GLAGAVSSTA TYPLDLVRRR MQVEGAGGRA RVYNTGLFGT FKHIFKSEGF 300
  301 KGIYRGILPE YYKVVPGVGI VFMTYDALRR LLTSLPD

Type	Start	End	Confidence
Cytoplasmic	1	44	0.66
Transmembrane Helix	45	60	0.34
Non-Cytoplasmic	61	148	0.62
Transmembrane Helix	149	169	0.72
Cytoplasmic	170	201	0.92
Transmembrane Helix	202	225	0.87
Non-Cytoplasmic	226	242	0.91
Transmembrane Helix	243	264	0.88
Cytoplasmic	265	337	0.87