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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50754667
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSGKGRGTP SGARGKEGRA RASGGEEDAC PVRKDSVSER GRGVWSRHVG RCVAWRRIGA  60
   61 AVRAMVGVGA ARRSWAAAVV VLQAAWALVG GQVRYSVPEE AEAGTVVGRL AQDLGLEAGE 120
  121 AEARRLRLVA RGRRASVEVS GASGALVVSS RLDREELCGK SAPCALRLEV LLDRPLRVFH 180
  181 VEVEVTDIND NAPRFPAAYK NISVSENSPS GSRFPLEGAS DADIGSNAQL SYKLSPSEYF 240
  241 ALEVKSIDDN KISVALILTH PLDRESLSEH RLVLTASDGG RPALTGTVQL VISVLDTNDN 300
  301 APQFNQSVYK VQLPEDAAPG TLFLQLKGTD KDEGINQEVY YAFTDTVPDD VKELFIIDGI 360
  361 SGEMRTAGEL DFEDVRSFDL EVEARDNGIP PLSGHCKVLL DVLDVNDNAP EVWVTSLSVP 420
  421 VPEDAALGTV VALLSVSDRD SGPNGRVRCA VRPPSPFGLV ATFAGSYSLV LREALDRERV 480
  481 SEYEVEAVYT VLARENNAAG AELARLWARD PDEAGNGRVS YSVAEGGAGT GSGSGSGSGW 540
  541 RPASSYVSVD AESGRLRALR PLDYEELQVL QFEVRAVDAG EPPLCGNATV QLFVVVAKIR 600
  601 AVDADSGYNA WLRYELREPR GEGPFRVGLY SGEVSTARAL EEADGPRQRL LIVVRDHGEP 660
  661 PRSATATLSV SLLGSGLSAA ASSGCGKVVL TNSGALRHRK QLKQCSEPGT WQPNTALWEL 720
  721 GNRRALGSEL LGCTRDRTTL PLHPLPGAMV AGWGSRSSLC PPVLDASCLL RCRAVCLCYC 780
  781 SLMEIARMWE IRIFAAFAEI WQTPFSVGQS TSCAHTPEGH ADTPGFSLRI EQDRTCLYAV 840
  841 EIPRRHRSAS ASHKPGVHVW TNDVFCPEQR GDWLKIQDGA GRREQKAFSG LWGVVNAALR 900
  901 PPTGRWNAKG AGELRGTVTP PAPGANLSSP CRRCAPVSAR WELVPVAEIL DYVPAEPGCG 960
  961 ELSREGRMRV CWMVFCLICC TAKGQVVYSI AEGTDRGTFV GNVAKDLGIN AAALSARKFR1020
 1021 MIIGSSKQYF NINATTGVLS VNEPIDREQL CELKSTCLLN YELVLENPLE LYRMEFKVLD1080
 1081 VNDNSPSFPL SEYRVSVPEF LSPGARFALP NAQDLDEGTN GVQNYILNPD EHFHLEMQMR1140
 1141 GDGSVYPELV LKKALDREQQ ATHRLVLIAE DGGDPPRSGD VPVIVTVLDT NDNAPEFEQS1200
 1201 VYRASVLENS PSGTLVVRVH ATDLDEGPNG EVRYSFSNAT AADLQQMFLI HPHTGEVTVS1260
 1261 GDLAVQRPLL EMLIEARDKG AFALSSTAKL LVEITDVNNH GPEITIASLS NPIPEDAVPG1320
 1321 TVIALLSIVD KDPGENGKVT CQIPDNLPFQ LKPSLENYYS LITSGLLDRE LISGYNITIT1380
 1381 ATDLGSPPIT TQQTLWVQIS DVNDNPPVFA ADTFDVFVEE NNPLGAFLYQ VSASDLDIGE1440
 1441 NGQISYILRN STVAGSALTS FLSVSLVNGS IYAKRAFDFE QLRSFHFQVE AKDNGSPALS1500
 1501 AAMTVNVYIS DQNDNAPAIL YPIGQNGSVA VEVVPRLADE DYLVTKVVAD DEDNAENAWL1560
 1561 SYHLVHSSDS TLFRLAPHSG ELRTTRSLRS TDLLKHKVVV VVRDHGEPPL SSTVTVGILL1620
 1621 ADTLPQALPD FDDNGEPPPL LNATNIYLIV SLACVSFIFT VFLLFLAIAR LCHCWACHHQ1680
 1681 GCCCSICCCS ADDYEKYRYS VHMLPSSHLP PDMLEVTGMG KLTHTYLYRA SVGLGLENSN1740
 1741 IPNGDAGNVP SSSRLQVPGP CIQVQQIQSD RLSAVLMLQH LFPPLLSWLN FITPLFVNPP1800
 1801 TRGQRKLKQI PPARQLAGLQ QGRKEGEGPR RGWAEGRCCS EDESPREQRA LQQQVQKCRR1860
 1861 LEARPVHPKL QQRSRGGGEG RRGWARPDRS PPSSAAATGS EGPGAPRGGN TWPEGERSEP1920
 1921 PPRAAAEHGP GSRRQPAAAA RRSHEAAGRG RTAGGPLRYS VREELPHGAF VGNVASDLGV1980
 1981 DPRRLAERGA RLTSGSGRQY LELELGRGAL LVRERMDREV LCELSPTCFL SLELVIEQPI2040
 2041 EVHNVEVELL ELVLQQPLDR EQSALLQLVL TAVDGGDPPR SGTAQISVRV VDTNDNPPAF2100
 2101 DRSTYTVNLL ENSPPGTLVV KLNASDPDEG SNGDVIYSFG SYTPQKVRQL FRVDPHSGEV2160
 2161 RVNGTLDYEE ASSYEIYVQA TDQGPVSMAG HCKVLVNIVD ANDNVPEVVL TSLYSPVPED2220
 2221 AKPGTVVALM SVTDQDSGLN KQVSLRIPPG LPFMLNSFKN SYTLMTQGNL DREKAAAYNI2280
 2281 TVTATDSGSP PLYSQKVIHV VISDINDNPP LFEEPVYSVY IPENNPLGVL LCTIKATDPD2340
 2341 VAENAYISYS LLDGEIEGLP AASFVTIKSD SGDMYAVKSF DYETLREFHV VVQAQDAGIP2400
 2401 SLSSTVTVYI YVVDVNDHAP EILYPTSTNT SAALEMIPRS AHAGYLVTKI IAIDGDSGQN2460
 2461 AWLFYYMVQT SDPDLFRIEL HTGEIRTTRK LREEGTPTFN LTVEVRDNGE PPMSSSVAIT2520
 2521 VAVVDRVSKI IPDTRRHIRS PSNYSEITLY LIIALCSISF VFLFTIIGLT VIKCYRYSLY2580
 2581 GDSCCTGFCG VRERCPAELY KQANNNIDAR LPHGLKVQPH FIEVRGNGSL TKTYCYKACL2640
 2641 TAGSGSDTFM FYNTCGPTGT VPSAVVTERH LTGQSGQSAQ NLIILKNDSI TPNELYPVLL2700
 2701 VLTCDTAKSV TGLCRGAYGH HSAFSNVPKH PNPDWRYSAS LRAGMQSAVH MEEAGILRGG2760
 2761 PGGPDQQWPT VSSATPEPEA GEVSPPVGAG VNSNSWTFKF GPSNSKQGGP DSKKQTQVSF2820
 2821 LLRRKGESSQ YSQ

YRC Informatics Platform - Version 3.0
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