YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|164426640, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGEQFDRE SVPQWRIHNI DYNSLKHYIK AHTTRSQGTA IAIPGHQAAA LSKFEDDLYD  60
   61 ELCRQHDRVD LFVSSKADEI ARRLQHLSNQ IHAHIVRCAA STRTRTSTKR QRQFARYEQE 120
  121 LLQCGDEIQA LQRFVNAHTV AFRKILKKYR KWTGSATLGS RFRETILANP KSFTKRDFSR 180
  181 LQSQYENLLQ TIRSASPRDS SRSGSSSPPT QPATPTRPAS AGEHRLVPNV TIVPEDDAPT 240
  241 GYWNEYDHGS EAGDDRCDEY AIYINPDEEM KFPGVSSIMN WISSPMKKIM GRGQESTPDQ 300
  301 RANESTEQQP LLGSSQTQST DRYGATLAPP SYFTYPPGVA PIDTDIDDDN VSDRFTNSPP 360
  361 HSFSRGRWRA ERRGSYGYAS SEEFPESGYR SLEQQRIARH RDETLFWGTW GCYLVTFVLM 420
  421 GIATMLIMTG RHKMRMEVDA GVTVGIVTSL GTAVAALCMW NSRHEFQAPS MIGEIAVWVT 480
  481 FVVACVGNAI LLVLMVGKAP

Type	Start	End	Confidence
Non-Cytoplasmic	1	405	0.90
Transmembrane Helix	406	428	0.94
Cytoplasmic	429	439	0.76
Transmembrane Helix	440	460	0.93
Non-Cytoplasmic	461	474	0.80
Transmembrane Helix	475	496	0.94
Cytoplasmic	497	500	0.77