YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40882248
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.87
Transmembrane Helix	20	38	0.91
Non-Cytoplasmic	39	44	0.82
Transmembrane Helix	45	67	0.93
Cytoplasmic	68	87	0.97
Transmembrane Helix	88	112	0.87
Non-Cytoplasmic	113	148	0.97
Transmembrane Helix	149	168	0.94
Cytoplasmic	169	179	0.80
Transmembrane Helix	180	201	0.88
Non-Cytoplasmic	202	219	0.77
Transmembrane Helix	220	242	0.84
Cytoplasmic	243	248	0.70
Transmembrane Helix	249	270	0.83
Non-Cytoplasmic	271	279	0.81
Transmembrane Helix	280	301	0.92
Cytoplasmic	302	310	0.77
Transmembrane Helix	311	329	0.95
Non-Cytoplasmic	330	335	0.70
Transmembrane Helix	336	357	0.76
Cytoplasmic	358	435	0.83
Transmembrane Helix	436	459	0.64
Non-Cytoplasmic	460	470	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGHHTNYHN STTCLSQAES LSLLALSAAC VAVLANTFQG DGYPLIASLA LGGLAFSATF  60
   61 SMIRWLGPTF MRAGLKGVDM SKHHKKELPE CMGAIAAMVY LLAVIVFIPF PFYKDIVAAT 120
  121 SGGGNRDVVM HVEHVQEGRF LHRFPHGKLA SYLSAVMALQ SISLLGIGDD LFDIRWRHKF 180
  181 FIPAFASIPL LVVYFVDFGV TSVVIPTPLQ PYLGELFNLG ALYYVYMASV AIFSPNSINI 240
  241 LAGINGIEVT QSIVIALLLA FNDCLYLLTP YPHPATDSHL FSLYFLVPFL GVSFALLWHN 300
  301 WYPARVFVGD TYCYFAGMVF VVVSILGHFS KTLILLLIPQ IFNFVYSVPQ LFGLVPCPRH 360
  361 RLPRFNARTG LLEPSVTPWT PERQPKPPVA WALKTLDKVK LLRVTLDEEG RFVETSNFTI 420
  421 LNLWLVWRGP LREDRLAMEI TGMQVVVGLF GLFVRHRLAL ILFKQDNLGV