YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40882232
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.99
Transmembrane Helix	67	88	0.92
Non-Cytoplasmic	89	104	0.90
Transmembrane Helix	105	124	0.93
Cytoplasmic	125	133	0.81
Transmembrane Helix	134	155	0.93
Non-Cytoplasmic	156	163	0.69
Transmembrane Helix	164	185	0.91
Cytoplasmic	186	194	0.79
Transmembrane Helix	195	215	0.93
Non-Cytoplasmic	216	223	0.76
Transmembrane Helix	224	244	0.95
Cytoplasmic	245	264	0.92
Transmembrane Helix	265	285	0.95
Non-Cytoplasmic	286	292	0.86
Transmembrane Helix	293	315	0.91
Cytoplasmic	316	331	0.90
Transmembrane Helix	332	353	0.90
Non-Cytoplasmic	354	376	0.93
Transmembrane Helix	377	397	0.92
Cytoplasmic	398	403	0.74
Transmembrane Helix	404	425	0.85
Non-Cytoplasmic	426	434	0.80
Transmembrane Helix	435	456	0.88
Cytoplasmic	457	468	0.74
Transmembrane Helix	469	491	0.79
Non-Cytoplasmic	492	540	0.88
Transmembrane Helix	541	559	0.95
Cytoplasmic	560	701	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSQSTAS LSSSGKSSHH NRPGDESKGA GSMAEPNDVE KLSPSPPPTG QPQPNEKDLY  60
   61 KPKSPRFWLT LLCNFMALFL VALDRTIIAT AVPRISDEFN ALGDIGWYGS AYMLTTSCAQ 120
  121 LVYGRIYKFY DMKWVFLVSV VVFEIGSAIC GAAPSSTVFI VGRAIAGMAS AGIFSGCMLI 180
  181 MIPMVPLHRR PAFQGLFGMV FGIASVMGPL IGGGFTSGAT WRWCFYINLP IGAVSFIFMV 240
  241 FFWNPPKEKR PPARPGVHIK RLDPIGMIFF LPGTVCLLLA LQWAGSTYAW NSWRIILLFA 300
  301 LFGACTAAFI VVQILKPKTA MVPPKVITQR SVAFGTAFTF FLAGSMLMMV YYVPIWSDQQ 360
  361 RRSKVQTVKQ VDPIKSGIYT LPLVLSLVVS SIIAGIITQK IGYYVPSMLV APSLMSVGEG 420
  421 LMSTLNPGSP SSHWAAFQFL TGFGLGFGMQ TSGLAIQTVL PKEDVSTGIA INFFVQQLGG 480
  481 AVFTSVGQTI LSNLLVKKLS GIPGIGGHVI VNEGATQLTN EVPPEYKDRV IGAYNYACQR 540
  541 IFLAAMGLAF ASLLCAFGME WKSIKKGRQG PPPSQPPENG SQGPNEGLLR PSSSFPLKDP 600
  601 SEGPTTNGLI MAKKEAPAEG LPRQHLRSRN SRRESLASEG RASGVLTKPP PAHMIPGSPT 660
  661 SAKDSPRSSD QKIEQDRGSS YHSAPTNMGS QEMKELPSPA A