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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50754515
Protein type: Transmembrane
Type Confidence: 0.69
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVVQKKNH WASRVRQCVL SRGPGGQLGF VLLGGAEHGE FPYAGAVAAG GGEQALSEGE  60
   61 LLLEVQGVRV SGLPRYDVLE VIRSCKEPIV VKAVRQGARG RGVSARGEGA EGRGERFPFG 120
  121 QRRLCEERDC CPCRSCTHVR AHLCHVQACV RTPASLRPGT LSRALLTRSQ PALSDSLRGW 180
  181 QLSCNRRCVA LEQAAKECED EDNSSLREIR NKWQSAELGT RCGPTQQKFI VLSFPSFNSL 240
  241 LPQKVSLRIL SPYVTNGRET GKYFHQVDAI NDFGSALELG WSHGREELWL YVSHVQDVRL 300
  301 PAGMLLLDGC LAVAVLTIRP SPCQSAEADA AVAEHGRPAS GSDSKLQFNL LAALKTKPSI 360
  361 APCTAVLGII ILSWFRILQE LSDRCCVSSL PKKCPPSSCS GCMHGDTLTC SGCTELGNLS 420
  421 HDTSSSGCQT ANAVKFTVNG KMLRWNSYLK AEKERHLKSV VVMAAVCSMA ATGRKAEFSS 480
  481 PKCLWSGASW KDSPSNSSER ESRVRSLAME ERGAAVPLQH VAGCCSHRSS GICRAAMNAD 540
  541 LVWLKVEGDN AAGCPGAGRI LQREKPPLGV GTARTNLQDE DGAGEFGAFS PSAVPWFAGL 600
  601 FFLFLQEDEC QEKECLYGSG LQTRLLEAFN TEDAGDAFQW NCFASGEQPW CLPASPCPDP 660
  661 CQVGKRLPGS EAASPFLVPG SLFMPNGNLK SWNTSPQWCH FGRVEVHGQQ EGTEQSLLRS 720
  721 DWGTVAMEGS VALRLDARTR GGYQAITHLL GLGPGRSGSR KYRNEQEIVF VPSSGKTLYL 780
  781 EASKLGEVLA KIVECTRKVI QEQSKPGEMR ISQEVLSGDG VKTSSSTVGC YKDSGYKFSS 840
  841 QCGHEHFKHR PFDADMCFCL MNAGLWSSSS HEIMKPGLHG CAFLARFLAM TYQQHSQMQV 900
  901 SSSIKLYLFT AAKIITLTKS CGRISVLYSK ADGLLGPVLF CNGTIRLFLL SHMRMHVRSR 960
  961 LNKDLRHYLN QRFQKGSPDH DLQQTIRDNL YRHAVPSGVA QCLSPHCSPA ARPRRGQEGD1020
 1021 PARDALSWGG NGVARCRCWA RSVGQLLGCR PQRQLRPMEE LEAARGRNGS PRGLLGLLSD1080
 1081 GAAMGPYGSK NDAWLPSRKL LQSGEEELRQ LLRSALLLAL MFCFSAGALQ CCHVASGLVA1140
 1141 VLAGSMQWEL CDGPPWVGAG QLPSEEQEVL PRDTHMYLFF GKSMDADDQF TDELSANAEW1200
 1201 KWAARLFGSL SQLMVLLEGS ERIVVSSGIP TSGSGKLRPS GTTRPPREGE VPGVDYNFLT1260
 1261 VEEFLELERS GTLLEVGTYE GNYYGTPKPP SQPLSGKVTS TDALQNLQSG SKQSTPKRTK1320
 1321 SYNDMQNAGI VHTENEEEDD APEMSSSFTA ESGDQDEHHT HIVRETAPPS AIDSHTNLPT1380
 1381 TEPSQSLPQY LPPSAEDNLG PLPENWEMAY TENGEVYFID HNTKTTSWLD PRCLSKQQKP1440
 1441 LEECEDDEGV HTEELDSELE LPAGWEKIED PVYGVYYVDH INRKTQYENP VLEAKRKKQL1500
 1501 EQQQQQPPEG KPFFTRNPSE LKGKFIHTKL RKSSRGFGFT VVGGDEPDEF LQIKSLVLDG1560
 1561 PAALDGKMET GDVIVSVNDT CVLGHTHAQV VKIFQSIPIG ASVDLELCRG YPLPFDPDDP1620
 1621 NTSLVTSVAI LDKEPIIVNG QENYDSPASH SSKTGKVNGT KEARPSSPAE VSSNGPHGYP1680
 1681 NDTVSLASSI ATQPELITVH IVKGPMGFGF TIADSPGGGG QRVKQIVDSP RCRGLKEGDL1740
 1741 IVEVNKKNVQ SLTHNQVVDM LIECPKGSEV TLLVQRGVKK VLSCCRAATH QPDICIQLSS1800
 1801 ARSIPALLRL ILSCREDLSE AAVKNELKVK QLEHLAARIF QTALAAAEVE KREHDRCAVP1860
 1861 VVWLCTPWLR YFTPHLSECL LSLIQPLAFI QCSNCITKSV DINSYCSVIR FEERQQSLVA1920
 1921 SLDHKGWECV MTVTTRTLGN AKEKQIDKRV ASKGNILSLI GSAGCRQPGE RLGLCWGCGF1980
 1981 LSSLLVAAAQ VSIANAERAL PPRPRCRARS PSPRALIRYE QTGLPVPKKS PKSQALERKD2040
 2041 SQNSSQHSVS SHRSGHTASP AHSTQVLPEY PAAEPPAADQ PDASGQKKPD PFKIWAQSRS2100
 2101 MYESRLPDYQ EQDIFLWRKE TGFGFRILGG NEPGEPIYIG HIVPLGAADA DGRLRSGDEL2160
 2161 ICVDGTPVVG KSHQLVVQLM QQAAKQGHVN LTVRRKVVYT VPKAENEVPS PASSHHSSNQ2220
 2221 PASLTEEKRT PQGSQNSLNT VSSGSGSTSG IGSGGGGGSG VVSTVVQPYD VEIRRGENEG2280
 2281 FGFVIVSSVS RPEAGTTFGR IIEGSPADRC GKLKVGDRIL AVNGCSITNK SHSDIVNLIK2340
 2341 EAGNTVTLRI IPGDESSNAT LLTNAEKIAT ITTTHTPQQI PQETSRNNTK PKQESQFDFK2400
 2401 PPQAAQLANI SKTFSLRLQE IVNIFMAVVI DVLVCGSQDQ DFYTVELERG AKGFGFSLRG2460
 2461 GREYNMDLYV LRLAEDGPAE RCGKMRIGDE ILEINGETTK NMKHARAIEL IKNGGRRVRL2520
 2521 FLKRGDGSVP EYGGSNYENI PFFPGITP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle