YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50754395
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	192	0.92
Transmembrane Helix	193	215	0.94
Non-Cytoplasmic	216	235	0.93
Transmembrane Helix	236	258	0.86
Cytoplasmic	259	275	0.87
Transmembrane Helix	276	296	0.90
Non-Cytoplasmic	297	303	0.81
Transmembrane Helix	304	326	0.93
Cytoplasmic	327	333	0.90
Transmembrane Helix	334	354	0.92
Non-Cytoplasmic	355	364	0.74
Transmembrane Helix	365	383	0.72
Cytoplasmic	384	401	0.73
Transmembrane Helix	402	422	0.91
Non-Cytoplasmic	423	443	0.77
Transmembrane Helix	444	465	0.81
Cytoplasmic	466	472	0.66
Transmembrane Helix	473	494	0.59
Non-Cytoplasmic	495	520	0.78
Transmembrane Helix	521	541	0.84
Cytoplasmic	542	573	0.95
Transmembrane Helix	574	595	0.82
Non-Cytoplasmic	596	600	0.57
Transmembrane Helix	601	619	0.84
Cytoplasmic	620	637	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARGADYNS HTATRLVAFT HVEPISISIS RRAGQALAAV HAGSCRRFVC EEAEDSACAV  60
   61 RTAARGRKRK RKGRGPARLS PDVSLPGSRR SAPRSRPRPP WGVTASLSYA LVEVLKAQLL 120
  121 GQLIIWSRFF YGLVLKRYGI AAFCMEVGSR QEFQFCCIPK CMCIKFLEVI KPFCVILPEI 180
  181 QKPERKIQFK EKVLWTAITL FIFLVCCQIP LFGIMSSDSA DPFYWMRVIL ASNRGTLMEL 240
  241 GISPIVTSGL IMQLLAGAKI IEVGDTPKDR ALFNGAQKLF GMIITIGQSI VYVMTGMYGD 300
  301 PSEMGAGICL LITIQLFVAG LIVLLLDELL QKGYGLGSGI SLFIATNICE TIVWKAFSPT 360
  361 TVNTGRGMEF EGAIIALFHL LATRTDKVRA LREAFYRQNL PNLMNLIATI FVFAIVIYFQ 420
  421 GFRVDLPIKS ARYRGQYNTY PIKLFYTSNI PIILQSALVS NLYVISQMLS ARFSGNLLVS 480
  481 LLGTWSDTSA GGPARAYPVG GLCYYLSPPE SFSSVLEDPV HAVVYIVFML GSCAFFSKTW 540
  541 IEVSGSSAKD VAKQLKEQQM VMRGHRETSM VHELNRYIPT AAAFGGLCIG ALSVLADFLG 600
  601 AIGSGTGILL AVTIIYQYFE IFVKEQSEVG SMGALLF