YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50754217
Protein type:	Globular with Signal Peptide
Type Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWGFVVKCS VLLLALCIAQ EDACGLAAAL ALCLAQGIGT EVTAGPHSTG RQVDLGTIMG  60
   61 LEKVCVSYQL ADSISVCVHV CAPVDFRHRA RAQWAKKSTS VCEVQAMLKQ QNGHELLLYD 120
  121 AFPPAEDGWW AASVAEAPIS ATQRPFSVPQ LPPESRQRPI PGASALSCRS HAADVCILRS 180
  181 SSSSIPLVSQ CHPLAVAPTA PLPQLCSAAA DVPKGCADSP GKPSDREHGH SSRTAAELQL 240
  241 RAPRMKGTAR GLLPLSGYFH RQELLSGLPG AITDWDNSFC VVSLHKDLLC SVAEVASPGP 300
  301 FVAGGCPSSP LPSSFATVGL HHSQALLAFF PRTVLLHAIR LHPRSAGRSR RWAPAQQTAG 360
  361 ALREAGPSQT KVALSRAELC RVFCPAGAAM AKSKNHTTHN QSRKWHRNGI KKPRSHRYES 420
  421 LKGVDPKFLR NMRFAKKHNK KGLKKMQANN AKQAALQKKD

Type	Start	End	Confidence
Signal Peptide	1	27	0.95
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	460	0.92