YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50754191
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPELLLDS NIRLWVVLPI VFITFFVGMI RHYVSILLQS DKRLTQEQVS DSQVLIRSRV  60
   61 LRENGKYIPK QSFLTRKYYF NNPEDGFFKK TKRKVVPPSP MTDPTMLTDM MKGNVTNVLP 120
  121 MILIGGWINM TFSGFVTTKV PFPLTLRFKP MLQQGIELLT LDASWVSSAS WYFLNVFGLR 180
  181 SIYTLILGQD NAADQSRVMQ EQMTGAAMAM PADTNKAFKT EWEALELTDH QWALEDVEEE 240
  241 LMAKDLHFEG MFKEELQTSI F

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.63
Transmembrane Helix	12	34	0.89
Cytoplasmic	35	114	0.63
Transmembrane Helix	115	137	0.74
Non-Cytoplasmic	138	162	0.63
Transmembrane Helix	163	179	0.49
Cytoplasmic	180	261	0.59