YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50753798
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	409	0.89
Transmembrane Helix	410	432	0.89
Cytoplasmic	433	450	0.78
Transmembrane Helix	451	473	0.84
Non-Cytoplasmic	474	495	0.81
Transmembrane Helix	496	516	0.87
Cytoplasmic	517	527	0.84
Transmembrane Helix	528	548	0.94
Non-Cytoplasmic	549	568	0.92
Transmembrane Helix	569	590	0.91
Cytoplasmic	591	605	0.89
Transmembrane Helix	606	628	0.90
Non-Cytoplasmic	629	652	0.92
Transmembrane Helix	653	674	0.90
Cytoplasmic	675	694	0.90
Transmembrane Helix	695	719	0.88
Non-Cytoplasmic	720	727	0.74
Transmembrane Helix	728	747	0.95
Cytoplasmic	748	759	0.80
Transmembrane Helix	760	780	0.91
Non-Cytoplasmic	781	785	0.80
Transmembrane Helix	786	807	0.93
Cytoplasmic	808	816	0.90
Transmembrane Helix	817	835	0.49
Non-Cytoplasmic	836	958	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAADSEDAS FGEVATDFGC IPVLEESNSK LFIFVKQFIQ HKLGPNVQLA AFKELSQQLP  60
   61 THGSRLTHTQ TVTALSARTG STHCYFRSSS LQFNQSHTCL EYQRQDISSQ GKDPCNHLAN 120
  121 SSQEQSFLHY YLKKFKTITS NTANIAMSPQ FVLNWSSGQG ALEHLLLHGD TAIPCQAWHG 180
  181 FSLELSRAHR AVAQCRVSTS TASCTVTSQL LTGKHEAQRI EALLKSTPKT HLKTHQVTNL 240
  241 LAMYLACPLS PHRAASPCLC GCTSPTFTSF PSARHPMTLP LISISPPFSL LQICYCTQTA 300
  301 EKVEETRHED SLKAAPALSI EKRSARSSAL PQADTSADRK GTASVQQHHP KKILEVLQQI 360
  361 RVLNLLDFRS VATFSQGLNQ IKLKQVKPGN IIGSGIFISP KGVLEHTGSV GLALIIWVLG 420
  421 GGVAALGSLC YAELGVTIPK SGGDYSYVTE IFGGLAGFLL LWSAVLIMYP TSLAVISLTF 480
  481 SNYVLQPVFP NCIPPYNASR ILSMVCLLLL TWVNSSSVRW ATRIQDIFTA GKLLALALII 540
  541 TVGFIQIFKG NYEELTPSKA FNFWMTPSVG HLALAFLQGS FAFSGWNFLN YVTEELVDPR 600
  601 RNLPRAIFIS IPLVTFVYTF TNIAYFTAMS PQELLSSNAV AVTFGEKLLG YFSWVMPVSV 660
  661 ALSTFGGING YLFTSSRLCF SGAREGHLPS LLAMIHVKYC TPIPALLVCC LATLIIMLVG 720
  721 DTYTLINYVS FINYLCYGVT IIGLIVLRWK KPKIFRPIKV NLLIPIAYLA FWAFLLVFSL 780
  781 YSEPVVCGVG LIIIFTGVPV FFLGVYWRNK PKCVNRLIVH VAYEWAVLGL QLSVVRTFPE 840
  841 QKQLPASPQP SSLSLTATTG HRRYLRDGPA PGLHLDKSSQ REGGRCGGAK ASVGKMAARS 900
  901 RTASRSARAA ALTAHLLPAE SVTCWGQKLC FVVYPQGGAA EEPAAHCHLP ASDKSPRK