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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50752715
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSTKSSRA SPPEQTPAVI REHAAARLPA VPGSKKQLQI SAFALPKLSS ICVSRSTASS  60
   61 PWQDAALGSR EDGSGAIICS LWLEGWNMHQ EEKARPKRGH GTLSGVWKGP GCTVPMVLLV 120
  121 PFQFKWLKPS ILQVPQAAEA WIWVLHPGNW PARELGEKGK RKIASGTMDI VQNISLINRQ 180
  181 KMKVNSEENA SGREVRSDSF MGSLLHVFQT FLLAPASCPA VTIGMETWDI GLGGRSQWRY 240
  241 SDFLRKEGPN YQKHLVGKIM QEKAAGVLKT WCQFLFITTV FISTGPAPAA EVIAILMAKH 300
  301 PKHEPHRAYL KRNQLHVYSM CSVRHRARPS AARVGVLQSI SRSTDCHRHR GPGASRQPRG 360
  361 RGKEEMDAGE RRSGNAHRTF LRTSELLGAG CSRGEERKRQ RDTEAESCWP GRVRPGPAAE 420
  421 PAQEPTADWW MELPLTLHRH GDKARPSPAR ALRGGGGAMT SRPCAVVPPC GGDAVTRIRT 480
  481 EVAAATTQST NHYTITARYR GCAADAHAAP RVRQCVAEPR RGVAAWCATP VHPRSAARCA 540
  541 PAEQMVPDFA RVRPASTCVV RLCTTTSLCI VRFCTAAAFP QLYFFLQCCL LFQRSGSIPV 600
  601 VLLRVLQSSL DRVRPQTENW GQTFVPLALI QALSSQLGEE ELCEERGGPR GGNEKRREGN 660
  661 GRVALYCRKA LRPASKAKRF CKAHAKALWR VFWGLLGAAY LCYFIAACWL NFQRALALVV 720
  721 ITAVVIFFVC WSLFKKYCGA KVLTLLSPLW KCLQKSWPWL KWLLYVLLLG GLVTWLALDT 780
  781 AKNPEQLISL AGFCVLVLFL FAFSKHHSAV SWRAVFWGLG LEFLIGLFIL RTTPGIQAFQ 840
  841 WLGDQIQVFL GYTKAGSGFV FGNTLIEDVF AFQSLPIIVF FSCVMSILYY LGVMQWLILK 900
  901 ISWLLQVSLG TTPTETLSVA GNIFVGQTEA PLLIRPYLAD MTHSEIHAVM AGGFSTIAGS 960
  961 VMGAYISFGI DAASLIAASV MAAPCALAMS KLVYPEVEES KFKGKESVRI ASGEERNILE1020
 1021 AASNGAAASV GLVANIAANL IAFLAVLEFI NAALRWFGEM VEIENLSFEM ICSYVLMPVA1080
 1081 FLMGADWADS PLVAELLGIK IFLNEFVAYQ QLATYKKNRL SGLEEWSEGR KQWISERAES1140
 1141 ITTFALCGFA NLSSIGIMLG GLTSMVPQRK SELASIVLRA LLTGICVSML NSCLAGLLYV1200
 1201 PTEMGNCVTI LSTANFTSTN YAIYTCCKQL FASTVLENGT LSFTGAWASV AESVPCLTQC1260
 1261 CGYYNHTSCT V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle