YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50752560
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.99
Transmembrane Helix	68	91	0.86
Non-Cytoplasmic	92	105	0.83
Transmembrane Helix	106	130	0.79
Cytoplasmic	131	138	0.91
Transmembrane Helix	139	161	0.80
Non-Cytoplasmic	162	171	0.83
Transmembrane Helix	172	193	0.73
Cytoplasmic	194	208	0.65
Transmembrane Helix	209	231	0.66
Non-Cytoplasmic	232	255	0.70
Transmembrane Helix	256	274	0.94
Cytoplasmic	275	298	0.80
Transmembrane Helix	299	321	0.80
Non-Cytoplasmic	322	341	0.73
Transmembrane Helix	342	361	0.88
Cytoplasmic	362	375	0.64
Transmembrane Helix	376	395	0.91
Non-Cytoplasmic	396	404	0.68
Transmembrane Helix	405	427	0.84
Cytoplasmic	428	439	0.58
Transmembrane Helix	440	457	0.66
Non-Cytoplasmic	458	505	0.86
Transmembrane Helix	506	525	0.91
Cytoplasmic	526	546	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAIAAKEG GRQRRPGSHH HCLDVRSEVP PALALCGDGP AGGEAEALLP PEPETPTARG  60
   61 PRGCRAELGS VLLLLALYVL QGIPLGLAGS VPLILQSKNA SYTEQAFFSF VFWPFSLKLL 120
  121 WAPLVDAVYL RRFGRRKSWL VPTQYVLGLF MIYLSTQVDL LLGDGQGRGP DVVALTVTFF 180
  181 LFEFLAATQD IAVDGWALTM LSRENVGYAS TCNSVGQTAG YFLGNVLFLA LESASFCNKY 240
  241 LRFQPQPRGI VTLSDFLFFW GAVFLITTTL VALLKKENKE LTPTKEETKG ITDTYKLLFS 300
  301 IIKMPAVLTF CLLILTAKVG FSAADAVTGL KLVEEGVPKE HLALLAVPMV PLQIILPLII 360
  361 SKYTAGPQPL NTFYKAMPFR LLLGLEFAFL VWWTPRVRHE GGFPIYYYVV VLLSYALHQI 420
  421 SLYSMYVAIM AFNAKVSDPL IGGTYMTLLN TVSNLGGNWP STVALWLVDP LTIKECIGAP 480
  481 EQACGNALEA ELCTKAGGSC VTTLDGYYVE SVICVILGFG WWFLLGPKFK KLQDEGQSSW 540
  541 KCKRTN