YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50752556
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKGGPGGR QQSEEDLLLQ DFSRNLSAKS SALFFGNAFI VSAIPIWLYW RIWHMDLVQS  60
   61 AVLYSVMTLI STYLVAFAYK NVKFVLKHKV AQKREDAVSK EVTRKLSEAD NRKMSRKEKD 120
  121 ERILWKKNEV ADYEATTFSI FYNNTLFLVL VIIASFFVLK NFNPTVNYIL SISASSGLIA 180
  181 LLSTGSK

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	50	0.96
Non-Cytoplasmic	51	59	0.73
Transmembrane Helix	60	79	0.94
Cytoplasmic	80	139	0.93
Transmembrane Helix	140	159	0.93
Non-Cytoplasmic	160	165	0.82
Transmembrane Helix	166	185	0.91
Cytoplasmic	186	187	0.80