YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40804634
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.42
Transmembrane Helix	6	24	0.64
Cytoplasmic	25	42	0.44
Transmembrane Helix	43	65	0.71
Non-Cytoplasmic	66	328	0.64
Transmembrane Helix	329	343	0.42
Cytoplasmic	344	418	0.63
Transmembrane Helix	419	440	0.75
Non-Cytoplasmic	441	477	0.64
Transmembrane Helix	478	499	0.77
Cytoplasmic	500	510	0.76
Transmembrane Helix	511	530	0.93
Non-Cytoplasmic	531	550	0.58
Transmembrane Helix	551	566	0.59
Cytoplasmic	567	587	0.65
Transmembrane Helix	588	610	0.88
Non-Cytoplasmic	611	618	0.52
Transmembrane Helix	619	641	0.70
Cytoplasmic	642	793	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPFSVLTLG IFVAGYITAR WDLVTRLYEL AIFAWNYGVV TRAAKGFGVL SLVFLIVFIP  60
   61 VQRLATLESN LHPRSPGSED DGLMRVFWPT DLPRSDCNGV VVGWRNSALD VLVVAVLEEV 120
  121 EPRRVESALK LGNLLRNAPH PVSRIYEQCG KSSISVLGVS NTPDTVEVDS SWIRVTIAPK 180
  181 QRVPSVTCAR ASSIQIILFE RPLPGRMQYM SLNPIALALG DKHDGFKQDF ADSGEEDDEK 240
  241 RERLSKETKR KLVEKLKQHS VIKRIPSPKE RALATIVNQI NWAWELEKLL QQNVSRIGTR 300
  301 PKRALSVSER VVESATTARD MVLVWLWELI TIYVLPVIKK VFVLGLMAHR VVAEMLLRIL 360
  361 EWRLRPRYAA LKDISATAQQ VEIRLQQFCY WPMQYVTLRM RKNDWASVTT SHPDYIRFYN 420
  421 SLWLVANDVI IGMAFGSYII ENAGWVADEI SRLLTTYTVE ALQSSISWLM GWPAGLKLNT 480
  481 ELAAFLGDLF LWVIEYWASC IETIRPMLPR IVLIIGFSSF AGASMPLALF SDLLSILTIH 540
  541 IYSFYLASAR IFHWQLNILQ SLFHLFRGKK HNVLRNRIDS CDYGLDQLLV GTILFTVLFF 600
  601 LLPTVVVFYL NFAIARMAII LFKACFDTAL SCLNHFPLFA LMLRVKDPKR LPGGIRFELR 660
  661 DTQDFGATSN DNIPLRQHPS TSVISLQSIP LDFKSMFYQY FQMGNRIRKH YLSPRVALCL 720
  721 LTGKFVPPLN RRNLYSLQYS MLPAKRAGVM EMWDAVNSLP ASKRKSMPIQ VPILANGRRL 780
  781 PSNYGGGRSR SYG