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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50752112
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQVDGQWDG DGASHPGGDP LEFGLRNTLK FELQNPLEFG VQNPPRFVQP PPPISSASSQ  60
   61 PCSTGREHCG PAATAACWQG SSWGLGAPGW GLFPPPPHAA LHMSRKGISM SAAMAERCVP 120
  121 FHPGGDLGLS PSQPSRGVGC GAATRFHHIP LCLPPAILNP KQPKETPKSF SFDYSYWSHT 180
  181 TPADINYASQ KQVYRDIGEE MLQHAFEGYN VCIFAYGQTG AGKSYTMMGK QEKDQQGIIP 240
  241 QLCEDLFSRI NDTTNDNMSY SVEVSYMEIY CERVRDLLNP KNKGNLRVRE HPLMGPYVED 300
  301 LSKLAVTSYN DIQDLMDSGN KARTVAATNM NETSSRSHAV FNIIFTQKRH DAETDITTEK 360
  361 VSKISLVDLA GSERADSTGA KGTRLKEGAN INKSLTTLGK VISALAEMDS GPNKNKKKKK 420
  421 TDFIPYRDSV LTWLLRENLG GNSRTAMVAA LSPADINYDE TLSTLRYADR AKQIRCNAVI 480
  481 NEDPNNKLIR ELKDEVARLR DLLYAQGLGD IIDMTNAIAG ISPSSSLSAL SSRAASVASL 540
  541 HERIMFAPGS EEAIERLKET EKIIAELNET WEEKLRRTEA IRMEREALLA EMGVAMREDG 600
  601 GTLGVFSPKK TPHLVNLNED PLMSECLLYY IKDGITRVGR EDAEKRQDIV LSGHFIKEEH 660
  661 CLFRSDTRTG GEVIVTLEPC EGADTYVNGK KVTEPSVLRS GNRIIMGKSH VFRFNHPEQA 720
  721 RQERERTPCA ETPAEPVDWA FAQRELLEKQ GIDMKQEMEQ RLQELEDQYR REREEANYLL 780
  781 EQQRLDYESK LEALQKQMDS RYYPEANEEE EEPEDEVQWT EREFELALWA FRKWKWYQFT 840
  841 SLRDLLWGNA IFLKEANAIS VELKKKVGAD CERWLSPSWC YWVLIAWVFG GLVALLLAAT 900
  901 ARPGEAAVPP DHRGRGGAGP EEWGNALLDP GEAKAAPGFD ARNVRPCSRS AFERHRGLRQ 960
  961 RGDRRGSLLR PLPMVQAGWQ VSALAPSMCS LEAQRPSGAA LLSGKAGLSP PWPTPLPVPS1020
 1021 GLPWSGATGQ GLSAAGGVPV PPCPMPVCVC AHL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle