YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50751470
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGAPSQCL LVSVVPLKLS GEQPISARGY HVLFRGALRF RSRVRRESRD ALVARPLLGK  60
   61 GRAVLLLFAA GLQSRQPELA GKSPSSLYGS PRPPVLLRNW RVPRGSALSW LQLLSATPGT 120
  121 GQLGLTVFGS CALSDVVQQC PAARAYLFHR TKSQPLFQLS TALPCHSCFP GICYTIFDLG 180
  181 FRFDVAWFLT ETSPYMWSNL GIGLAISLSV VGAAWGIYIT GSSIIGGGVK APRIKTKNLV 240
  241 SIIFCEAVAI YGIIMAIVIS NMAEPFSGVT PETIGAKNYH AGFSMFGAGL TVGFSNLFCG 300
  301 VCVGIVGSGA ALADAQNPSL FVKILIVEIF GSAIGLFGVI VAILQTSKVK MGN

Type	Start	End	Confidence
Cytoplasmic	1	155	0.62
Transmembrane Helix	156	178	0.77
Non-Cytoplasmic	179	199	0.84
Transmembrane Helix	200	219	0.94
Cytoplasmic	220	238	0.81
Transmembrane Helix	239	259	0.95
Non-Cytoplasmic	260	287	0.87
Transmembrane Helix	288	312	0.86
Cytoplasmic	313	323	0.76
Transmembrane Helix	324	344	0.95
Non-Cytoplasmic	345	353	0.89