YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50751041
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCAQVETSP RRCWQKVLYE RQPFPDNYVD QRFLEELRKN IHARQYQYWN VVYESGVVVQ  60
   61 QLCSVCVFVV TWWYMDAGLL SPQGLFGAAL LTSLLGYVLF DAIDAGVGRR ESGRTRWADL 120
  121 KSTLVFTAFT YGFSPVLKTL TESISTDTIY AMSAFMLLGH LIFFDYGANA AIVSSTLSLN 180
  181 MAIFASVCLA SRLPRSLHAF VMVTFAMQIF ALWPMLQKKL KARTPCCYVG VTALFALVAL 240
  241 VGLASVSSVG AVLFASLLLS ISCLCPYCLI RLQQLKDNIH GPWDEAEIKE DLSRFLM

Type	Start	End	Confidence
Cytoplasmic	1	50	0.94
Transmembrane Helix	51	74	0.85
Non-Cytoplasmic	75	83	0.72
Transmembrane Helix	84	103	0.90
Cytoplasmic	104	116	0.86
Transmembrane Helix	117	137	0.72
Non-Cytoplasmic	138	145	0.58
Transmembrane Helix	146	164	0.81
Cytoplasmic	165	170	0.62
Transmembrane Helix	171	190	0.86
Non-Cytoplasmic	191	196	0.71
Transmembrane Helix	197	216	0.92
Cytoplasmic	217	224	0.87
Transmembrane Helix	225	244	0.94
Non-Cytoplasmic	245	250	0.70
Transmembrane Helix	251	270	0.93
Cytoplasmic	271	297	0.93